bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_2745_orf1
Length=82
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_013000 activator 1 36 kDa, putative (EC:2.7.7.7); K... 106 2e-23
pfa:PF14_0601 replication factor C3; K10756 replication factor... 86.7 2e-17
tpv:TP04_0380 replication factor C subunit 3; K10756 replicati... 80.9 9e-16
bbo:BBOV_II002510 18.m06203; replication factor C3 protein; K1... 68.6 5e-12
cpv:cgd3_3170 replication factor RFC3 AAA+ ATpase ; K10756 rep... 64.3 8e-11
mmu:72151 Rfc5, 2610020K06Rik, 2610209F07Rik, 36.5kDa, 36kDa, ... 64.3 1e-10
hsa:5985 RFC5, MGC1155, RFC36; replication factor C (activator... 62.4 3e-10
sce:YNL290W RFC3; Rfc3p; K10756 replication factor C subunit 3/5 58.5
xla:443952 MGC80325 protein; K10756 replication factor C subun... 56.6 2e-08
cel:F44B9.8 ARPA; hypothetical protein; K10756 replication fac... 56.2 2e-08
bbo:BBOV_IV002210 21.m03053; replication factor C subunit 4; K... 55.5 5e-08
xla:380369 rfc5, MGC53482; replication factor C (activator 1) ... 54.3 9e-08
cel:F58F6.4 rfc-2; RFC (DNA replication factor) family member ... 54.3 9e-08
dre:445385 rfc5, zgc:110313; replication factor C (activator 1... 54.3 1e-07
dre:503748 rfc2, zgc:110810; replication factor C (activator 1... 53.5 2e-07
pfa:PFL2005w replication factor C subunit 4; K10755 replicatio... 50.1 2e-06
sce:YOL094C RFC4; Rfc4p; K10755 replication factor C subunit 2/4 49.7
ath:AT1G77470 replication factor C 36 kDA, putative; K10756 re... 49.3 3e-06
tgo:TGME49_010960 replication factor C subunit, putative (EC:2... 48.9 4e-06
hsa:5984 RFC4, A1, MGC27291, RFC37; replication factor C (acti... 48.9 4e-06
tpv:TP03_0432 replication factor C subunit 4; K10755 replicati... 47.4 1e-05
dre:406435 rfc4, rcf4, zgc:64030; replication factor C (activa... 47.0 2e-05
cpv:cgd3_1450 replication factor C like AAA+ ATpase ; K10755 r... 45.8 3e-05
xla:398706 rfc4, rfc2; replication factor C (activator 1) 4, 3... 43.5 2e-04
mmu:19718 Rfc2, 2610008M13Rik, 40kDa, AI326953, MGC117486, Rec... 42.7 3e-04
mmu:106344 Rfc4, A1, AI894123, AU040575, RFC37; replication fa... 42.7 3e-04
hsa:5982 RFC2, A1, MGC3665, RFC40; replication factor C (activ... 42.4 3e-04
xla:431883 rfc2, MGC81391, rfc40; replication factor C (activa... 41.6 6e-04
tgo:TGME49_051670 ATPase, AAA family domain containing protein... 40.8 0.001
tgo:TGME49_037110 replication factor C small subunit, putative... 40.4 0.001
tpv:TP03_0565 replication factor C large subunit; K10754 repli... 37.7 0.010
ath:AT1G63160 replication factor C 40 kDa, putative; K10755 re... 37.4 0.011
tgo:TGME49_035170 replication factor C subunit, putative (EC:6... 37.0 0.017
ath:AT1G21690 emb1968 (embryo defective 1968); ATP binding / A... 36.6 0.020
cpv:cgd8_2940 replication factor C like AAA ATpase ; K10755 re... 36.6 0.023
bbo:BBOV_III002960 17.m07281; hypothetical protein; K10755 rep... 35.0 0.057
pfa:PFB0840w replication factor C, subunit 2; K10755 replicati... 33.5 0.18
cpv:cgd8_610 DNA replication repC1, AAA+ ATpase with a BRCT do... 33.1 0.25
sce:YJR068W RFC2; Rfc2p; K10755 replication factor C subunit 2/4 32.3
tpv:TP01_0978 replication factor C subunit 2; K10755 replicati... 31.6 0.71
pfa:PFB0895c replication factor C subunit 1, putative; K10754 ... 30.8 1.0
hsa:3371 TNC, 150-225, GMEM, GP, HXB, JI, MGC167029, TN, TN-C;... 29.6 2.5
mmu:21923 Tnc, AI528729, C130033P17Rik, Hxb, MGC144208, MGC144... 29.3 2.8
dre:100151092 efcab6; EF-hand calcium binding domain 6 28.9
xla:494685 shcbp1-b, shcbp1; SHC SH2-domain binding protein 1 28.1
tgo:TGME49_006570 kinesin, putative 27.7 9.5
> tgo:TGME49_013000 activator 1 36 kDa, putative (EC:2.7.7.7);
K10756 replication factor C subunit 3/5
Length=398
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 62/81 (76%), Gaps = 0/81 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RFTP+ +L+ KA + + E M +++DG +AL++IA GDMRRLLNCMQA+ +AHP
Sbjct 216 CTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHP 275
Query 61 GEPVDGELVHRVLGLPQPSEV 81
GE V+ ++VHR LGLP PSEV
Sbjct 276 GEEVNADIVHRTLGLPPPSEV 296
> pfa:PF14_0601 replication factor C3; K10756 replication factor
C subunit 3/5
Length=344
Score = 86.7 bits (213), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 56/82 (68%), Gaps = 0/82 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT+ RF PLK E ++ KA + AK EN+++TE G ++L+R+ GDMRR+LNC+Q S++H
Sbjct 165 CTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHK 224
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
+D ++ L +P PSE K
Sbjct 225 NLVIDENVILSTLDIPLPSETK 246
> tpv:TP04_0380 replication factor C subunit 3; K10756 replication
factor C subunit 3/5
Length=347
Score = 80.9 bits (198), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PLK + +R + E AKLEN+ +T+ +AL+ I GDMRR+LNC+Q SM+H
Sbjct 165 CTGFRFQPLKSDVVRERIREIAKLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHA 224
Query 61 GEP---VDGELVHRVLGLPQPSEV 81
+D L+ GLPQ SE+
Sbjct 225 KGADFTIDANLILATSGLPQSSEI 248
> bbo:BBOV_II002510 18.m06203; replication factor C3 protein;
K10756 replication factor C subunit 3/5
Length=348
Score = 68.6 bits (166), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASM--- 57
CT RF PLK + ++R+ + AK E ++V+E + L I GDMRR+LNC+Q +M
Sbjct 166 CTGFRFPPLKNDVVKRRTADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIG 225
Query 58 AHPGEPVDGELVHRVLGLPQPSEV 81
A + + ++V GLP P+E+
Sbjct 226 ATRDKVITSDVVISTAGLPNPTEI 249
> cpv:cgd3_3170 replication factor RFC3 AAA+ ATpase ; K10756 replication
factor C subunit 3/5
Length=383
Score = 64.3 bits (155), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 20/101 (19%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF+PL E +R + E A E + +T +G E+L++ + GDMR++LN +Q+ SM++
Sbjct 190 CTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMSNY 249
Query 61 GEP--------------------VDGELVHRVLGLPQPSEV 81
G ++ E++HR+LG+P SE+
Sbjct 250 GNIEKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSEL 290
> mmu:72151 Rfc5, 2610020K06Rik, 2610209F07Rik, 36.5kDa, 36kDa,
MGC113787, Recc5; replication factor C (activator 1) 5; K10756
replication factor C subunit 3/5
Length=339
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PL PE + + E + EN+ ++EDG +AL+ ++SGDMRR LN +Q+ +MA
Sbjct 168 CTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG 227
Query 61 GEPVDGELVHRVLGLPQPSEV 81
V E V+ G P +++
Sbjct 228 --KVTEETVYTCTGHPLKTDI 246
> hsa:5985 RFC5, MGC1155, RFC36; replication factor C (activator
1) 5, 36.5kDa; K10756 replication factor C subunit 3/5
Length=255
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PL PE + + E + E + ++EDG +AL+ ++SGDMRR LN +Q+ +MA
Sbjct 84 CTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAF- 142
Query 61 GEPVDGELVHRVLGLPQPSEV 81
V E V+ G P S++
Sbjct 143 -GKVTEETVYTCTGHPLKSDI 162
> sce:YNL290W RFC3; Rfc3p; K10756 replication factor C subunit
3/5
Length=340
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQA--ASMA 58
CT RF PL EA+ R+ E + ++ + +AL+ +++GDMRR+LN +Q+ A++
Sbjct 161 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLD 220
Query 59 HPGE-PVDGELVHRVLGLPQPSEVK 82
+P E + ++++ G P+PS++K
Sbjct 221 NPDEDEISDDVIYECCGAPRPSDLK 245
> xla:443952 MGC80325 protein; K10756 replication factor C subunit
3/5
Length=335
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PL E + + E K E++ ++ DG +AL+ +++GDMRR LN +Q+ +MA+
Sbjct 164 CTRFRFGPLSSEMMIPRLEHVVKEEHVDISPDGMKALVTLSNGDMRRSLNILQSTNMAY- 222
Query 61 GEPVDGELVHRVLGLPQPSEV 81
V + V+ G P S++
Sbjct 223 -SKVTEDTVYTCTGHPLRSDI 242
> cel:F44B9.8 ARPA; hypothetical protein; K10756 replication factor
C subunit 3/5
Length=368
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PL + + + E + E + +T DG +ALL ++ GDMR ++N +Q+ +M+
Sbjct 187 CTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSF- 245
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
+ V V++ +G P P E+K
Sbjct 246 -DTVSENTVYQCIGQPTPKEMK 266
> bbo:BBOV_IV002210 21.m03053; replication factor C subunit 4;
K10755 replication factor C subunit 2/4
Length=306
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R+ PL+ E + + K EN+ T DG EALL A+GDMRR +N +Q S +
Sbjct 153 CAVIRYEPLQDEMILTRLIHICKEENVQYTNDGMEALLFTANGDMRRAVNNLQNVSSGY- 211
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
+ + V++V +P P ++
Sbjct 212 -NLITSQNVYKVCDVPSPELIR 232
> xla:380369 rfc5, MGC53482; replication factor C (activator 1)
5, 36.5kDa; K10756 replication factor C subunit 3/5
Length=335
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PL + + + E K E + ++ DG +AL+ +++GDMRR LN +Q+ +MA+
Sbjct 164 CTRFRFGPLSSDMMIPRLEHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQSTNMAY- 222
Query 61 GEPVDGELVHRVLGLPQPSEV 81
V + V+ G P S++
Sbjct 223 -GKVTEDTVYTCTGHPLRSDI 242
> cel:F58F6.4 rfc-2; RFC (DNA replication factor) family member
(rfc-2); K10755 replication factor C subunit 2/4
Length=334
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R+T L P L + +E AK E ++ + G EA+L A GDMR+ LN +QA A+
Sbjct 159 CALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAY- 217
Query 61 GEPVDGELVHRVLGLPQP 78
E V+ E V +V P P
Sbjct 218 -ELVNKENVLKVCDEPHP 234
> dre:445385 rfc5, zgc:110313; replication factor C (activator
1) 5; K10756 replication factor C subunit 3/5
Length=334
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
CT RF PL + + E + E++ +T DG +A++ +++GDMRR LN +Q+ MA+
Sbjct 163 CTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAY- 221
Query 61 GEPVDGELVHRVLGLPQPSEV 81
V E V+ G P S++
Sbjct 222 -GKVTEETVYTCTGHPLRSDI 241
> dre:503748 rfc2, zgc:110810; replication factor C (activator
1) 2; K10755 replication factor C subunit 2/4
Length=349
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R++ L+ E + + E + EN+ VT DG EA++ A GDMR+ LN +Q+ +
Sbjct 180 CAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG 239
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
++ E V +V P P VK
Sbjct 240 --YINSENVFKVCDEPHPLLVK 259
> pfa:PFL2005w replication factor C subunit 4; K10755 replication
factor C subunit 2/4
Length=336
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R+ L + + ++ + LEN+ T+DG +AL IA GD+R+ +NC+Q+
Sbjct 165 CAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYAGL- 223
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
E ++ E V + +P P ++
Sbjct 224 -EVINKENVLHICDIPSPERIE 244
> sce:YOL094C RFC4; Rfc4p; K10755 replication factor C subunit
2/4
Length=323
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R++ L E + ++ + KLE++ T DG EA++ A GDMR+ +N +Q+ H
Sbjct 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH- 216
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
V+ + V +++ P P VK
Sbjct 217 -GLVNADNVFKIVDSPHPLIVK 237
> ath:AT1G77470 replication factor C 36 kDA, putative; K10756
replication factor C subunit 3/5
Length=369
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMA-- 58
CT RF PL + ++ + + E + V++ G AL+R+++GDMR+ LN +Q+ MA
Sbjct 189 CTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASK 248
Query 59 ----HPGEPVDGELVHRVLGLPQPSEVK 82
+ + E V+ G P P +++
Sbjct 249 EITEEESKQITEEDVYLCTGNPLPKDIE 276
> tgo:TGME49_010960 replication factor C subunit, putative (EC:2.7.7.7);
K10755 replication factor C subunit 2/4
Length=336
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +RF L L R+ + +E + VT+DG EA++ A GDMR LN +Q+ A
Sbjct 181 CAILRFRKLDDSQLVRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSALNNLQSTVSAFG 240
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
V+ E V +V P P V+
Sbjct 241 --VVNRENVEKVCDNPPPEAVR 260
> hsa:5984 RFC4, A1, MGC27291, RFC37; replication factor C (activator
1) 4, 37kDa; K10755 replication factor C subunit 2/4
Length=363
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 46/75 (61%), Gaps = 0/75 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C+ RF PL + +++ + AK EN+ ++++G L++++ GD+R+ + +Q+A+
Sbjct 194 CSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTG 253
Query 61 GEPVDGELVHRVLGL 75
G+ + +++ + G+
Sbjct 254 GKEITEKVITDIAGV 268
> tpv:TP03_0432 replication factor C subunit 4; K10755 replication
factor C subunit 2/4
Length=324
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R++ L+ E + ++ +EN++ T++G EALL A GD+RR +N +Q S
Sbjct 155 CAVIRYSKLQDEQILKRLVTICDMENLTYTDEGMEALLFSADGDLRRAVNNLQIVSAGF- 213
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
+ V + V +V +P P ++
Sbjct 214 -KVVTKDNVFKVCDIPSPDLIQ 234
> dre:406435 rfc4, rcf4, zgc:64030; replication factor C (activator
1) 4; K10755 replication factor C subunit 2/4
Length=358
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 0/82 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C+ RF PL + + + E + EN+ T +G +AL+R++ GD+R+ + +Q+ + +
Sbjct 189 CSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNS 248
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
+ + + + G+ P ++
Sbjct 249 EREITEQTIIEIAGVVPPKVIQ 270
> cpv:cgd3_1450 replication factor C like AAA+ ATpase ; K10755
replication factor C subunit 2/4
Length=339
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R++ L +R++ E K+EN+ + G + L+ A GDMR ++N +QA H
Sbjct 165 CAIIRYSKLTDAQIRKRLFEIIKMENIPYVDSGIDTLVFTADGDMRIVINNLQATY--HG 222
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
V + V +V +P P ++K
Sbjct 223 FSMVSRDNVLKVSDIPSPEKIK 244
> xla:398706 rfc4, rfc2; replication factor C (activator 1) 4,
37kDa; K10755 replication factor C subunit 2/4
Length=363
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 0/75 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C+ RF PL + ++ + EN+ +T + L+ ++ GD+R+ + +Q+A+
Sbjct 193 CSKFRFKPLADKIQTQRLLSICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTR 252
Query 61 GEPVDGELVHRVLGL 75
G+ + E+V + G+
Sbjct 253 GKEITEEIVTEIAGV 267
> mmu:19718 Rfc2, 2610008M13Rik, 40kDa, AI326953, MGC117486, Recc2;
replication factor C (activator 1) 2; K10755 replication
factor C subunit 2/4
Length=349
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R+T L + + + E + T+DG EA++ A GDMR+ LN +Q ++ +
Sbjct 180 CAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ-STFSGF 238
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
G ++ E V +V P P VK
Sbjct 239 GY-INSENVFKVCDEPHPLLVK 259
> mmu:106344 Rfc4, A1, AI894123, AU040575, RFC37; replication
factor C (activator 1) 4; K10755 replication factor C subunit
2/4
Length=364
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 0/75 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C+ RF PL + + + + A+ EN+ + + L++I+ GD+R+ + +Q+A+
Sbjct 194 CSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTG 253
Query 61 GEPVDGELVHRVLGL 75
G+ V +++ + G+
Sbjct 254 GKEVSEDVITDIAGV 268
> hsa:5982 RFC2, A1, MGC3665, RFC40; replication factor C (activator
1) 2, 40kDa; K10755 replication factor C subunit 2/4
Length=320
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R+T L + + + E + T+DG EA++ A GDMR+ LN +Q+
Sbjct 151 CAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG 210
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
++ E V +V P P VK
Sbjct 211 F--INSENVFKVCDEPHPLLVK 230
> xla:431883 rfc2, MGC81391, rfc40; replication factor C (activator
1) 2, 40kDa; K10755 replication factor C subunit 2/4
Length=348
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +R+T L + + + + E + T+DG EA++ A GDMR+ LN +Q+
Sbjct 180 CAVLRYTKLTDAQVLARLMDVVEKEKVQCTDDGLEAIVFTAQGDMRQALNNVQSTCAGFG 239
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
V+ V +V P P VK
Sbjct 240 F--VNSTNVFKVCDEPHPLLVK 259
> tgo:TGME49_051670 ATPase, AAA family domain containing protein
(EC:2.7.7.7)
Length=1101
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 0/55 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAA 55
C + PL E L + AAK EN+++TE + R+A GD RR LN ++ A
Sbjct 758 CRVCKLEPLTEEDLTTILQRAAKEENVTITEAAVRVICRLADGDARRALNMLENA 812
> tgo:TGME49_037110 replication factor C small subunit, putative
(EC:2.7.7.7); K10755 replication factor C subunit 2/4
Length=357
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 0/59 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAH 59
C+ RF P+ +A + E + VT +ALLRI+ GD+RR + +Q+A+ +
Sbjct 190 CSPHRFEPVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIY 248
> tpv:TP03_0565 replication factor C large subunit; K10754 replication
factor C subunit 1
Length=1084
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 0/53 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQ 53
C +RF P + + + KLEN+ VTE+ L +SGD+R LN +Q
Sbjct 677 CLDLRFNPPPIDLYINRINKICKLENIKVTENLLLELYHKSSGDLRYTLNYLQ 729
> ath:AT1G63160 replication factor C 40 kDa, putative; K10755
replication factor C subunit 2/4
Length=333
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C +RF+ L + + + E + +G EA++ A GDMR+ LN +QA
Sbjct 164 CALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF- 222
Query 61 GEPVDGELVHRVLGLPQPSEVK 82
V+ E V +V P P VK
Sbjct 223 -SFVNQENVFKVCDQPHPLHVK 243
> tgo:TGME49_035170 replication factor C subunit, putative (EC:6.5.1.2);
K10754 replication factor C subunit 1
Length=1260
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 0/53 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQ 53
C +RF P ALR + E+ A E++S+ + L A GD+R++L +Q
Sbjct 801 CLDLRFHPPHMAALRSRVEKIAAAEDLSLDPQAVDYLCESAGGDLRQILTSLQ 853
> ath:AT1G21690 emb1968 (embryo defective 1968); ATP binding /
ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/
nucleotide binding; K10755 replication factor C subunit
2/4
Length=339
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 0/56 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAAS 56
C RF PL E + + E +S+ + L I+ GD+RR + +Q+A+
Sbjct 166 CAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAT 221
> cpv:cgd8_2940 replication factor C like AAA ATpase ; K10755
replication factor C subunit 2/4
Length=335
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 0/56 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAAS 56
C RF P+ + + + E++S + E ++ ++ GD+RR +N +Q+AS
Sbjct 166 CAKFRFQPISANSQIERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSAS 221
> bbo:BBOV_III002960 17.m07281; hypothetical protein; K10755 replication
factor C subunit 2/4
Length=336
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C++ F P+ +A + E++ + + L +++ GDMRR + +Q S A
Sbjct 164 CSAFHFKPISQDAQIERLRYICTAESLEYEDHALDFLTQVSQGDMRRSVTILQ--STASL 221
Query 61 GEPVDGELVHRVLGLPQPSEV 81
V E V V G P P E+
Sbjct 222 FNKVTEEAVRNVSGYP-PKEI 241
> pfa:PFB0840w replication factor C, subunit 2; K10755 replication
factor C subunit 2/4
Length=330
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 0/56 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAAS 56
C+ RF + + K + EN+ + +D E ++ GD+RR ++ +Q S
Sbjct 163 CSCYRFQSIPINIKKEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCS 218
> cpv:cgd8_610 DNA replication repC1, AAA+ ATpase with a BRCT
domain at the N-terminus ; K10754 replication factor C subunit
1
Length=874
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query 1 CTSMRFT-PLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAH 59
C +RF+ P K + ++R E A K E M + + E L D+R++LN +Q S+++
Sbjct 463 CYDLRFSRPSKVQIIKRMQEIANK-EGMKIEPNAIELLCESVGNDLRQILNELQLLSLSN 521
> sce:YJR068W RFC2; Rfc2p; K10755 replication factor C subunit
2/4
Length=353
Score = 32.3 bits (72), Expect = 0.35, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 0/56 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAAS 56
C+ RF L + ++ EN+ + E +L I++GD+RR + +Q+AS
Sbjct 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS 239
> tpv:TP01_0978 replication factor C subunit 2; K10755 replication
factor C subunit 2/4
Length=335
Score = 31.6 bits (70), Expect = 0.71, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHP 60
C+ F P++ + + + E ++ + E L ++SGDMR+ + +Q+ + +
Sbjct 166 CSVFHFKPIETNSQVDRLKYICNQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLY- 224
Query 61 GEPVDGELVHRVLGLPQPSEV 81
+ ++ V G P P EV
Sbjct 225 -NEITENAINSVSGKP-PKEV 243
> pfa:PFB0895c replication factor C subunit 1, putative; K10754
replication factor C subunit 1
Length=904
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 0/59 (0%)
Query 1 CTSMRFTPLKPEALRRKAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAH 59
C ++F+ + ++ ++ E K E + + + E L GD+R++LN +Q S +
Sbjct 524 CYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWESTCGDIRQMLNTLQLLSKTY 582
> hsa:3371 TNC, 150-225, GMEM, GP, HXB, JI, MGC167029, TN, TN-C;
tenascin C; K06252 tenascin
Length=2201
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 10 KPEALRRKAEEAAKLENMSVTEDGFEAL 37
KP ++ E+A +LEN++VTE G++ L
Sbjct 1063 KPARVKASTEQAPELENLTVTEVGWDGL 1090
> mmu:21923 Tnc, AI528729, C130033P17Rik, Hxb, MGC144208, MGC144209,
TN, TN-C, Ten, cytotactin, tenascin-C; tenascin C; K06252
tenascin
Length=2019
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 0/28 (0%)
Query 10 KPEALRRKAEEAAKLENMSVTEDGFEAL 37
KP ++ EE LEN++VTE G++ L
Sbjct 1063 KPARVKASTEEVPSLENLTVTEAGWDGL 1090
> dre:100151092 efcab6; EF-hand calcium binding domain 6
Length=1032
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 0/48 (0%)
Query 17 KAEEAAKLENMSVTEDGFEALLRIASGDMRRLLNCMQAASMAHPGEPV 64
+ E + LENM++T++ F L D +NC Q + H PV
Sbjct 377 RNELFSALENMNLTDEQFTVLADFLDVDHTDAINCQQFLDLLHLQNPV 424
> xla:494685 shcbp1-b, shcbp1; SHC SH2-domain binding protein
1
Length=698
Score = 28.1 bits (61), Expect = 8.1, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query 4 MRFTPLKPEALRRKAEEAAKLENMSVTE-----DGFEAL---LRIASGDMRRLLNCMQAA 55
M+FT L+ + ++ A+L+N+S+ E D E L L++ + R L C Q
Sbjct 260 MQFTNLRNNLSNKDSDSEAELDNVSMVEGMKMDDEMENLKRKLKLIKNPLLRYLFCYQRN 319
Query 56 S-----MAHPGEPVDGELVHRV 72
S A P G+++H V
Sbjct 320 SGSYNMQAKGPRPTGGKVIHVV 341
> tgo:TGME49_006570 kinesin, putative
Length=1195
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 0/43 (0%)
Query 37 LLRIASGDMRRLLNCMQAASMAHPGEPVDGELVHRVLGLPQPS 79
++ + D R LLN + + H E V ++V + LP+PS
Sbjct 701 IIAFSQEDNRHLLNSTASETREHHSEEVRSDIVEVLSALPKPS 743
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2049280912
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40