bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
164,496 sequences; 82,071,388 total letters
Query= Eace_2777_orf1
Length=120
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 218 4e-57
pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 197 6e-51
tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 184 5e-47
cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 184 6e-47
bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 181 3e-46
ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 179 2e-45
sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 171 6e-43
mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 167 6e-42
hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 167 6e-42
cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 167 7e-42
dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 167 7e-42
bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 133 1e-31
cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 133 2e-31
tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 130 8e-31
pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 130 9e-31
cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 129 2e-30
dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 127 6e-30
ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 127 1e-29
ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 125 3e-29
mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 125 3e-29
sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 125 3e-29
hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 125 3e-29
sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 124 7e-29
cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 120 9e-28
mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 118 4e-27
hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 118 4e-27
tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 118 5e-27
tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 117 6e-27
dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 117 9e-27
xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 115 2e-26
ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 115 3e-26
cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 114 1e-25
bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 113 1e-25
ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 113 2e-25
tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 110 1e-24
pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 90.5 1e-18
ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-dire... 80.9 8e-16
eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,... 73.2 2e-13
tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7... 43.5 2e-04
eco:b0797 rhlE, ECK0786, JW0781; ATP-dependent RNA helicase; K... 27.7 8.6
> tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,
putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase
II subunit RPB2 [EC:2.7.7.6]
Length=1259
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/120 (86%), Positives = 107/120 (89%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
VPSRMTIGHLVECLLGKTAAI GGEGDATPFN Y V I+ LH LG+ER GNERLYHGH
Sbjct 1056 VPSRMTIGHLVECLLGKTAAIFGGEGDATPFNGYAVLDISNRLHSLGYERFGNERLYHGH 1115
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
TG H+PSLIF GPTYYQRLKHMVDDKIHARARGPV LTRQPMEGKSREGGLRFGEMERD
Sbjct 1116 TGRHLPSLIFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERD 1175
> pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit,
putative; K03010 DNA-directed RNA polymerase II subunit
RPB2 [EC:2.7.7.6]
Length=1340
Score = 197 bits (502), Expect = 6e-51, Method: Composition-based stats.
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
VPSRMTIGHLVECL GK AAI GGEGDATPF+ TV I+ +LH LG+E++GNE LY+GH
Sbjct 1137 VPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKITVQEISQKLHNLGYEKYGNEMLYNGH 1196
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + S IFIGPTYYQRLKHMV+DKIHAR+RGP+ +TRQP EG+SR+GGLRFGEMERD
Sbjct 1197 NGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERD 1256
> tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1190
Score = 184 bits (468), Expect = 5e-47, Method: Composition-based stats.
Identities = 82/120 (68%), Positives = 97/120 (80%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
VPSRMTIGHL+ECLLGK +++G EGDATPF+ T+ I+ L + + R+GNE ++G
Sbjct 987 VPSRMTIGHLIECLLGKVGSLVGMEGDATPFSKMTLDQISNRLFKCRYSRYGNEAFHNGF 1046
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
TG M S IF+GPTYYQRLKHMV+DKIHARARGPV LTRQP EG+SREGGLRFGEMERD
Sbjct 1047 TGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEMERD 1106
> cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1177
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 87/120 (72%), Positives = 98/120 (81%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
+PSRMTIGHL+ECLLGK AI G EGDATPF TV I+ LH GF+++GNE +Y+GH
Sbjct 974 IPSRMTIGHLIECLLGKACAIQGLEGDATPFTKITVEEISSRLHSSGFQKNGNEVMYNGH 1033
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
TG + S IFIGPTYYQRLKHMVDDKIHARARG V LTRQP EG++REGGLRFGEMERD
Sbjct 1034 TGKRLESRIFIGPTYYQRLKHMVDDKIHARARGAVTMLTRQPREGRAREGGLRFGEMERD 1093
> bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta
subunit family protein (EC:2.7.7.6); K03010 DNA-directed
RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1207
Score = 181 bits (460), Expect = 3e-46, Method: Composition-based stats.
Identities = 85/120 (70%), Positives = 95/120 (79%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
VPSRMTIGHLVECL+GK A G EGDATPF+ TV +A L G+ +HGNE L+ G
Sbjct 1004 VPSRMTIGHLVECLVGKVGACCGMEGDATPFSKLTVQHVAERLFECGYGKHGNEALHCGF 1063
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
TG + S IFIGPTYYQRLKHMV+DKIHARARGPV LTRQP EG+SR+GGLRFGEMERD
Sbjct 1064 TGEMIVSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERD 1123
> ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase;
K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1188
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 99/120 (82%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
+PSRMTIG L+EC++GK AA +G EGDATPF D TV I+ LH+ G++ G ER+Y+GH
Sbjct 978 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGH 1037
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
TG + ++IF+GPTYYQRLKHMVDDKIH+R RGPV LTRQP EG+SR+GGLRFGEMERD
Sbjct 1038 TGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1097
> sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6);
K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1224
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 95/120 (79%), Gaps = 0/120 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGH 60
+PSRMT+ HL+ECLL K AA+ G EGDA+PF D TV I+ L G++ G E +Y+GH
Sbjct 1017 IPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGH 1076
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
TG + + IF GPTYYQRL+HMVDDKIHARARGP+ LTRQP+EG+SR+GGLRFGEMERD
Sbjct 1077 TGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERD 1136
> mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase
(RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNERLYHG 59
+PSRMTIGHL+ECL GK +A G GDATPFND V I+ L G+ GNE LY+G
Sbjct 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNG 1031
Query 60 HTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMER 119
TG + S IFIGPTYYQRLKHMVDDKIH+RARGP+ L RQPMEG+SR+GGLRFGEMER
Sbjct 1032 FTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMER 1091
Query 120 D 120
D
Sbjct 1092 D 1092
> hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA)
II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNERLYHG 59
+PSRMTIGHL+ECL GK +A G GDATPFND V I+ L G+ GNE LY+G
Sbjct 972 IPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNG 1031
Query 60 HTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMER 119
TG + S IFIGPTYYQRLKHMVDDKIH+RARGP+ L RQPMEG+SR+GGLRFGEMER
Sbjct 1032 FTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMER 1091
Query 120 D 120
D
Sbjct 1092 D 1092
> cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member
(rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2
[EC:2.7.7.6]
Length=1193
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 94/121 (77%), Gaps = 1/121 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNERLYHG 59
VPSRMTIGHL+ECL GK +A G GDATPFND V I+G L G+ GNE +Y+G
Sbjct 978 VPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNG 1037
Query 60 HTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMER 119
HTG + + IF GPTYYQRLKHMVDDKIH+RARGP+ + RQPMEG++R+GGLRFGEMER
Sbjct 1038 HTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMER 1097
Query 120 D 120
D
Sbjct 1098 D 1098
> dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed)
polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA
polymerase II subunit RPB2 [EC:2.7.7.6]
Length=1174
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFND-YTVSWIAGELHRLGFERHGNERLYHG 59
+PSRMT+GHL+ECL GK +A G GDATPFND V ++ L G+ GNE LY+G
Sbjct 972 IPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNG 1031
Query 60 HTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMER 119
TG + S IF+GPTYYQRLKHMVDDKIH+RARGPV L RQPMEG+SR+GGLRFGEMER
Sbjct 1032 FTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMER 1091
Query 120 D 120
D
Sbjct 1092 D 1092
> bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta
subunit; K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1171
Score = 133 bits (335), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/119 (54%), Positives = 80/119 (67%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G ++E + K A + G D TPF ++ I L + GF G E LY G T
Sbjct 972 PSRMTVGKMLELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGIT 1031
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + +LIF GP YYQ+LKHMV DKIHARA GP +LTRQP EG+S++GGLR GEMERD
Sbjct 1032 GEPLETLIFTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERD 1090
> cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed
RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1281
Score = 133 bits (334), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/141 (48%), Positives = 84/141 (59%), Gaps = 22/141 (15%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEG-DATPFN---------------------DYTVSWI 39
PSRMTIG L+E + GK A I G DATPFN TV +
Sbjct 1037 PSRMTIGMLLESMGGKAACIHGARSLDATPFNINISDDLSRSEENCEDDKAGEKTTVDYF 1096
Query 40 AGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALT 99
L R GF+ +G E LY+G TG+ +P IF+G YYQRL+HMV DK RA GP+ ALT
Sbjct 1097 GKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRATGPIDALT 1156
Query 100 RQPMEGKSREGGLRFGEMERD 120
RQP++G+ R GG+RFGEMERD
Sbjct 1157 RQPVKGRKRHGGIRFGEMERD 1177
> tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1244
Score = 130 bits (328), Expect = 8e-31, Method: Composition-based stats.
Identities = 69/134 (51%), Positives = 84/134 (62%), Gaps = 15/134 (11%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPF-NDYT--------------VSWIAGELHRL 46
PSRMT+G L+E + K++ G D+TPF N Y+ +S I L +
Sbjct 1034 PSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNSGSNKMSDICDILIKN 1093
Query 47 GFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGK 106
GF G E LY G +G + +LIFIGP YYQRLKHMV DKIHAR RGP +TRQP EG+
Sbjct 1094 GFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQPTEGR 1153
Query 107 SREGGLRFGEMERD 120
SR+GGLR GEMERD
Sbjct 1154 SRDGGLRLGEMERD 1167
> pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit
RPC2 [EC:2.7.7.6]
Length=1450
Score = 130 bits (328), Expect = 9e-31, Method: Composition-based stats.
Identities = 69/125 (55%), Positives = 81/125 (64%), Gaps = 12/125 (9%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEG------DATPFNDYTVSWIAGELHRLGFERHGNER 55
PSRMT+G L+E L+ AA++ GE TPF + IA L R GF E
Sbjct 1254 PSRMTVGKLLE-LVASKAAVMDGEYKYGSIFSGTPFEE-----IAEILFRYGFNCSSKEL 1307
Query 56 LYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFG 115
LY G TG + + IF+GP YYQ+LKHMV DKIHARARGP LTRQP EG+S+EGGLR G
Sbjct 1308 LYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLG 1367
Query 116 EMERD 120
EMERD
Sbjct 1368 EMERD 1372
> cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1154
Score = 129 bits (324), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/119 (54%), Positives = 77/119 (64%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G L+E L GK + G T F V + EL G+ G + L G T
Sbjct 956 PSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGIT 1015
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + I+ GP YYQ+LKHMV DK+HARARGP AALTRQP EG+SREGGLR GEMERD
Sbjct 1016 GQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERD 1074
> dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase
(RNA) III (DNA directed) polypeptide B; K03021 DNA-directed
RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1140
Score = 127 bits (320), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G L+E L GK + G T F V + +L R G+ G + + G T
Sbjct 932 PSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGIT 991
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + I+ GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERD
Sbjct 992 GEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1050
> ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA
polymerase
Length=1172
Score = 127 bits (318), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/130 (50%), Positives = 82/130 (63%), Gaps = 11/130 (8%)
Query 2 PSRMTIGHLVECLLGK-TAAIIGGEGD----------ATPFNDYTVSWIAGELHRLGFER 50
PSR T G L+E L K A I EG ATPF+ V+ I +LHR GF R
Sbjct 952 PSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSR 1011
Query 51 HGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREG 110
GNER+Y+G +G M S+IF+GPT+YQRL HM +DK+ R GPV LTRQP+ + R G
Sbjct 1012 WGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1071
Query 111 GLRFGEMERD 120
G++FGEMERD
Sbjct 1072 GIKFGEMERD 1081
> ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA
polymerase/ ribonucleoside binding
Length=1055
Score = 125 bits (315), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/131 (51%), Positives = 82/131 (62%), Gaps = 12/131 (9%)
Query 2 PSRMTIGHLVECLLGKTAA--IIGGEGD----------ATPFNDYTVSWIAGELHRLGFE 49
PSR T G L+E L K A I EG ATPF+ V+ I +LHR GF
Sbjct 834 PSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFS 893
Query 50 RHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSRE 109
R GNER+Y+G +G M SLIF+GPT+YQRL HM ++K+ R GPV LTRQP+ + R
Sbjct 894 RWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRF 953
Query 110 GGLRFGEMERD 120
GG+RFGEMERD
Sbjct 954 GGIRFGEMERD 964
> mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2;
polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1133
Score = 125 bits (315), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G L+E L GK + G T F V + +L R G+ G + + G T
Sbjct 935 PSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGIT 994
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + I+ GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERD
Sbjct 995 GEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1053
> sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1149
Score = 125 bits (314), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G ++E + GK + G T F + ++ L GF G + LY G T
Sbjct 950 PSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGIT 1009
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + IF GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERD
Sbjct 1010 GECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1068
> hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase
(RNA) III (DNA directed) polypeptide B (EC:2.7.7.6);
K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1075
Score = 125 bits (314), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/119 (52%), Positives = 77/119 (64%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G L+E L GK + G T F V + +L R G+ G + + G T
Sbjct 877 PSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGIT 936
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + I+ GP YYQ+LKHMV DK+HARARGP A LTRQP EG+SR+GGLR GEMERD
Sbjct 937 GEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 995
> sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1203
Score = 124 bits (311), Expect = 7e-29, Method: Composition-based stats.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPF----NDYTVSWIAGELHRLGFERHGNERLY 57
PSRMTIG VE L GK A+ G D+TP+ +D + +L + G+ HGNE +Y
Sbjct 955 PSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMY 1014
Query 58 HGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEM 117
G TG + + I++G YYQRL+HMV+DK R+ GPV +LT QP++G+ R GG+R GEM
Sbjct 1015 SGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEM 1074
Query 118 ERD 120
ERD
Sbjct 1075 ERD 1077
> cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Length=1287
Score = 120 bits (302), Expect = 9e-28, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 74/119 (62%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G L+E + K + + G T F + A L GF G E L G T
Sbjct 1091 PSRMTVGKLLELISSKASVLDGNYRYGTAFGGTPLEESAKCLVEHGFHYSGKEYLTSGTT 1150
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + IF+GP YYQ+LKHMV DK+HAR RGP LTRQP EG+S++GGLR GEMERD
Sbjct 1151 GEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERD 1209
> mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1135
Score = 118 bits (296), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/123 (47%), Positives = 78/123 (63%), Gaps = 4/123 (3%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPF----NDYTVSWIAGELHRLGFERHGNERLY 57
PSRMTIG L+E + GK+AA+ G DATPF + + + L G+ +G ERLY
Sbjct 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLY 980
Query 58 HGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEM 117
G +G+ + + IFIG YYQRL+HMV DK R G +T QP+ G++ +GG+RFGEM
Sbjct 981 SGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEM 1040
Query 118 ERD 120
ERD
Sbjct 1041 ERD 1043
> hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,
Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1079
Score = 118 bits (296), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 4/123 (3%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPF----NDYTVSWIAGELHRLGFERHGNERLY 57
PSRMTIG L+E + GK+AA+ G DATPF + + + L G+ +G ERLY
Sbjct 865 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLY 924
Query 58 HGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEM 117
G +GL + + IFIG YYQRL+HMV DK R G +T QP+ G++ +GG+RFGEM
Sbjct 925 SGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEM 984
Query 118 ERD 120
ERD
Sbjct 985 ERD 987
> tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1235
Score = 118 bits (295), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 16/136 (11%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDY----------------TVSWIAGELH 44
+PSRMTIG L+E + GK A+I G D+T F Y V + L
Sbjct 1005 LPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQAYYSENPENGDEEMEEVDVVDYFGKSLI 1064
Query 45 RLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPME 104
+ G+E +G E +Y G G + + IF+G YYQRL+HMV DK R+ GPV +T+QP++
Sbjct 1065 KSGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVK 1124
Query 105 GKSREGGLRFGEMERD 120
G+ GG+RFGEMERD
Sbjct 1125 GRKNLGGIRFGEMERD 1140
> tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative
(EC:2.7.7.6); K03021 DNA-directed RNA polymerase III
subunit RPC2 [EC:2.7.7.6]
Length=1332
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 75/119 (63%), Gaps = 0/119 (0%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYTVSWIAGELHRLGFERHGNERLYHGHT 61
PSRMT+G ++E + GK+A +G T F V + L GF G E L G T
Sbjct 1136 PSRMTVGKMMELIAGKSALQVGACQYGTAFGGVGVETLGEILAAHGFHYSGKEYLTSGIT 1195
Query 62 GLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
G + + +F GP YYQ+LKHMV DKIHAR RGP LTRQP EG+++EGGLR GEMERD
Sbjct 1196 GEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERD 1254
> dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298,
wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6);
K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1132
Score = 117 bits (293), Expect = 9e-27, Method: Composition-based stats.
Identities = 59/123 (47%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFN----DYTVSWIAGELHRLGFERHGNERLY 57
PSRMTIG L+E + GK+A++ G DATPF + + L G+ +G ERLY
Sbjct 918 PSRMTIGMLIESMAGKSASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLY 977
Query 58 HGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEM 117
G +GL + + IFIG YYQRL+HMV DK R G +T QPM G++ +GG+RFGEM
Sbjct 978 SGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEM 1037
Query 118 ERD 120
ERD
Sbjct 1038 ERD 1040
> xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide
B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1134
Score = 115 bits (289), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/123 (47%), Positives = 78/123 (63%), Gaps = 4/123 (3%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFN----DYTVSWIAGELHRLGFERHGNERLY 57
PSRMTIG L+E + GK+AA+ G DATPF + + + L G+ +G E+LY
Sbjct 920 PSRMTIGMLIESMAGKSAALHGLCHDATPFTFSEENSALEYFGEMLRAGGYNFYGTEKLY 979
Query 58 HGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEM 117
G +GL + + IFIG YYQRL+HMV DK R G +T QP+ G++ +GG+RFGEM
Sbjct 980 SGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGRNIQGGIRFGEM 1039
Query 118 ERD 120
ERD
Sbjct 1040 ERD 1042
> ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1178
Score = 115 bits (289), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/133 (44%), Positives = 75/133 (56%), Gaps = 14/133 (10%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYT--------------VSWIAGELHRLG 47
PSRMTI L+E + K ++ G DATPF D V + L G
Sbjct 938 PSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKG 997
Query 48 FERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKS 107
F +G E LY G+ G+ + IF+GP YYQRL+HMV DK R+ G V LT QP++G+
Sbjct 998 FNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRK 1057
Query 108 REGGLRFGEMERD 120
R GG+RFGEMERD
Sbjct 1058 RGGGIRFGEMERD 1070
> cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1127
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 76/123 (61%), Gaps = 4/123 (3%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPF----NDYTVSWIAGELHRLGFERHGNERLY 57
PSRMTIG ++E + GK AA G DA+PF ++ ++ L + G+ +GNE Y
Sbjct 895 PSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFY 954
Query 58 HGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEM 117
G G M IF G YYQRL+HM+ DK RA GP+ +T QP++G+ + GG+RFGEM
Sbjct 955 SGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEM 1014
Query 118 ERD 120
ERD
Sbjct 1015 ERD 1017
> bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta
subunit; K03002 DNA-directed RNA polymerase I subunit RPA2
[EC:2.7.7.6]
Length=1283
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 82/159 (51%), Gaps = 39/159 (24%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDY-------------------------- 34
+PSRMTIG L+EC+ GK+AAI G DAT F Y
Sbjct 1030 LPSRMTIGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRY 1089
Query 35 -------------TVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKH 81
+ + L + G++ +G E +Y G G + + IFIG +YQRL+H
Sbjct 1090 MSKEEELSKTEDDVIDYFGKTLLQAGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRH 1149
Query 82 MVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
MV DK RA GPV A+T+QP++G+ GG+RFGEMERD
Sbjct 1150 MVSDKAQVRATGPVDAITKQPVKGRKNRGGIRFGEMERD 1188
> ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/
ribonucleoside binding; K03021 DNA-directed RNA polymerase
III subunit RPC2 [EC:2.7.7.6]
Length=1161
Score = 113 bits (282), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/126 (48%), Positives = 77/126 (61%), Gaps = 9/126 (7%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGE-------GDATPFNDYTVSWIAGELHRLGFERHGNE 54
PSRMT+G ++E LLG A + G G+ + D V I+ L GF G +
Sbjct 954 PSRMTVGKMIE-LLGSKAGVSCGRFHYGSAFGERSGHAD-KVETISATLVEKGFSYSGKD 1011
Query 55 RLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRF 114
LY G +G + + IF+GP YYQ+LKHMV DK+HAR GP +TRQP EGKS+ GGLR
Sbjct 1012 LLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRV 1071
Query 115 GEMERD 120
GEMERD
Sbjct 1072 GEMERD 1077
> tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2,
putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase
I subunit RPA2 [EC:2.7.7.6]
Length=1388
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 81/161 (50%), Gaps = 42/161 (26%)
Query 2 PSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYT-------------------------- 35
PSRMTIG L+E + GK AA+ G DATPF ++
Sbjct 1111 PSRMTIGMLIESMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERY 1170
Query 36 ----------------VSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRL 79
V + L R G++ +G E LY G G+ + + IF G YYQRL
Sbjct 1171 RTPEEERQAQDEPETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRL 1230
Query 80 KHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
+HMV DK RA GPV ALT QP++G+ R GG+RFGEMERD
Sbjct 1231 RHMVTDKHQVRATGPVDALTHQPVKGRKRHGGVRFGEMERD 1271
> pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative;
K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Length=1517
Score = 90.5 bits (223), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 0/88 (0%)
Query 33 DYTVSWIAGELHRLGFERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARAR 92
D + + A L G++ +G E LY G G+ + + IFIG YYQRL+HM DK R
Sbjct 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
Query 93 GPVAALTRQPMEGKSREGGLRFGEMERD 120
GPV LT QP++GK + GG+R GEMERD
Sbjct 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERD 1412
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 0/35 (0%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDYT 35
+PSRMTIG L+E + GK A++ G DATPF YT
Sbjct 1201 IPSRMTIGMLIESICGKAASLYGKRIDATPFRKYT 1235
> ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-directed
RNA polymerase subunit beta [EC:2.7.7.6]
Length=1072
Score = 80.9 bits (198), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query 1 VPSRMTIGHLVECLLGKTAAIIGGEGDATPFNDY-----TVSWIAGELHRLG-------- 47
VPSRM +G + EC LG +++ PF++ + + EL+
Sbjct 859 VPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWV 918
Query 48 FERH--GNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEG 105
FE G R++ G TG + IG Y +L H VDDKIH R+ G A +T+QP+ G
Sbjct 919 FEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRG 978
Query 106 KSREGGLRFGEME 118
+S++GG R GEME
Sbjct 979 RSKQGGQRVGEME 991
> eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,
ron, sdgB, stl, stv, tabD, tabG; RNA polymerase, beta subunit
(EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit
beta [EC:2.7.7.6]
Length=1342
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query 28 ATPFNDYTVSWIAGELHRLG-FERHGNERLYHGHTGLHMPSLIFIGPTYYQRLKHMVDDK 86
ATP D EL +LG G RLY G TG + +G Y +L H+VDDK
Sbjct 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242
Query 87 IHARARGPVAALTRQPMEGKSREGGLRFGEME 118
+HAR+ G + +T+QP+ GK++ GG RFGEME
Sbjct 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274
> tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6);
K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Length=1005
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 0/58 (0%)
Query 61 TGLHMPSLIFIGPTYYQRLKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEME 118
TG + + + Y+ +L H K R G ++LT+QP++GK G +FGEME
Sbjct 877 TGYQLKNFNLMLMPYFLKLMHTSKSKFQYRTVGKYSSLTQQPVKGKRVNGSQKFGEME 934
> eco:b0797 rhlE, ECK0786, JW0781; ATP-dependent RNA helicase;
K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Length=454
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query 79 LKHMVDDKIHARARGPVAALTRQPMEGKSREGGLRFGEMERD 120
L+H++ + HA+ R PV AL P +RE + GE RD
Sbjct 60 LQHLITRQPHAKGRRPVRALILTP----TRELAAQIGENVRD 97
Lambda K H
0.322 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2018002440
Database: egene_temp_file_orthology_annotation_similarity_blast_database_966
Posted date: Sep 16, 2011 8:45 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40