bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0155_orf3 Length=254 Score E Sequences producing significant alignments: (Bits) Value 5833.PFE0785c 302 8e-81 > 5833.PFE0785c Length=456 Score = 302 bits (773), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 139/232 (59%), Positives = 186/232 (80%), Gaps = 0/232 (0%) Query 21 SLRDLRMPAWHELQRYLTDPEILTSEILFLILTLSNIFVVYRLFLDVVPFPVFVTWWQLA 80 +P W +++RY DPE+LT+EILF+ LTL N+FV+YRLFLDV+P+P+FVTWWQLA Sbjct 2 KFEKFNIPEWSDIERYFKDPELLTAEILFVALTLCNVFVMYRLFLDVIPYPIFVTWWQLA 61 Query 81 QGLLMAWCLGEVGKEYPKLAYFPRVEIDRRLLRRLFVPTIVNALMLVLANVLLYRVQCVA 140 QGLL+A+ GE+G+E+PK AYFP+VEI+ +L+ LFVP+I LMLVL+N LLY+ C+A Sbjct 62 QGLLVAYVCGELGREFPKFAYFPKVEINENMLKVLFVPSIFYCLMLVLSNYLLYKTPCIA 121 Query 141 TLPVVVAFAVVLHHVTRFVGCGEEYMPMRWQAVGLLFTAFLLGITDSKTVGSDVLPWAIL 200 + PV+V+F VV HH+TRF+GCGEEYMP+RW+++ L AF++G DSKT G V+ WA+L Sbjct 122 SYPVLVSFTVVFHHLTRFIGCGEEYMPLRWKSIVFLLAAFIIGCFDSKTTGKGVIVWALL 181 Query 201 YAIFSAAFRAAFLQKVMHEVEGKGNLLHNHQHFISVIILPVLMLICGEGSVL 252 YA+FSA FRA F+QK+MH V+GKGN LHN+QH + V+ILPVL+L+ GE SV Sbjct 182 YALFSAIFRAGFMQKIMHLVDGKGNTLHNNQHLLGVLILPVLILLSGELSVF 233 Lambda K H 0.331 0.143 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 78050691609 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40