bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Emax_0187_orf1
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF13_0228 137 2e-31
> 5833.PF13_0228
Length=306
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 72/85 (84%), Gaps = 0/85 (0%)
Query 120 MKLNIANPACGLQKTIEIDDEKKLLPFFERRIGMDIRGDSLGDEYKGYILRITGGNDKQG 179
MKLNI+NP +QK+IEIDDEKKLLPF E+RIG + GDS+G+E+ GY+ RITGGNDKQG
Sbjct 1 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNAVPGDSIGEEFTGYVFRITGGNDKQG 60
Query 180 FPMLQGILINNRVRLLFNNLMKCYR 204
FPM+QG+L NNRVRLLF MKCYR
Sbjct 61 FPMIQGVLTNNRVRLLFKKGMKCYR 85
Lambda K H
0.331 0.148 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 50836997767
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40