bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0187_orf1 Length=205 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0228 137 2e-31 > 5833.PF13_0228 Length=306 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 61/85 (71%), Positives = 72/85 (84%), Gaps = 0/85 (0%) Query 120 MKLNIANPACGLQKTIEIDDEKKLLPFFERRIGMDIRGDSLGDEYKGYILRITGGNDKQG 179 MKLNI+NP +QK+IEIDDEKKLLPF E+RIG + GDS+G+E+ GY+ RITGGNDKQG Sbjct 1 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNAVPGDSIGEEFTGYVFRITGGNDKQG 60 Query 180 FPMLQGILINNRVRLLFNNLMKCYR 204 FPM+QG+L NNRVRLLF MKCYR Sbjct 61 FPMIQGVLTNNRVRLLFKKGMKCYR 85 Lambda K H 0.331 0.148 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 50836997767 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40