bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0198_orf2 Length=141 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF0290w 119 3e-26 > 5833.PFF0290w Length=293 Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 0/138 (0%) Query 4 RAEEYSFMCNRFNVPNTRMAEVTWFFYMLKYVDLLDTVFMIVRGNWRQVSFLHVYHHSSV 63 + +S N + +A W FY+ K VD +DT+ +++R W Q +FLHVYHH SV Sbjct 121 KNRRFSLFYNSVDFSKKNIALCCWLFYLNKLVDFVDTILIVLRKKWNQFTFLHVYHHLSV 180 Query 64 IYISWVNASVGYDGEIYYVVALNALVHVVMYAYYFMASLNSPLARMVKIFVTQLQMAQFL 123 I WVN SVGYDG+IYY++ +N+ VH VMY YY+++S+ + K VT LQM QFL Sbjct 181 FLIMWVNTSVGYDGDIYYIIVVNSFVHFVMYLYYYLSSVKFKVPIFAKACVTYLQMLQFL 240 Query 124 SMTAHACYHVYYYKTCRY 141 S+ Y ++ C Y Sbjct 241 SIILPGFYVLFVRHYCPY 258 Lambda K H 0.332 0.138 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22827922775 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40