bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0207_orf1 Length=107 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd3_1570 84.3 1e-15 > 5807.cgd3_1570 Length=162 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 5/102 (4%) Query 9 AWEKLIKNNYKIEMMKEDG---EIELIDCYEHELLRHAIVDGKAPNGVYIGGIKYKLAEV 65 AW+ L++ +++ +++ DG ELI+ + L AI +GKAPNGV++GG KYK+ V Sbjct 40 AWKTLVREDHEENVIQSDGVSEAAELIN--DQTTLCQAISEGKAPNGVWVGGNKYKIIRV 97 Query 66 KRDFTYNDQNYDIAILGKNKGGGFLIKTPNDNVVVALYDEEK 107 ++DF ND + + +GG FL+ T N VVVA+YDE K Sbjct 98 EKDFQQNDATVHVTFCNRPQGGCFLVDTQNGTVVVAVYDESK 139 Lambda K H 0.314 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22528463995 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40