bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0324_orf3 Length=265 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd3_4100 424 1e-117 > 5807.cgd3_4100 Length=260 Score = 424 bits (1090), Expect = 1e-117, Method: Compositional matrix adjust. Identities = 201/260 (77%), Positives = 232/260 (89%), Gaps = 0/260 (0%) Query 6 MPQNEYMEQHRKRFGERLDTAERKRKKAARMPHERSKTARKLRGIKAKLFNRRRFVEKAQ 65 MPQNEY+E HRKR G R D E+KRK +R H+ S+ A+KLRGIKAKL+N++R+ EKA Sbjct 1 MPQNEYIELHRKRHGYRFDHFEKKRKFESRKVHKDSQHAQKLRGIKAKLYNKKRYAEKAT 60 Query 66 MKKTIKQHEEKEGKQKEPETVPEGAVPSYLLDREGVSRTKILTNMIKQKRKEKAGKWQVP 125 ++K +K +EEK+ +K+PE V +GAVPSYLLDREGV+RTKIL+NMIKQKRKEK+ KWQVP Sbjct 61 LRKLVKANEEKDAVEKDPENVQKGAVPSYLLDREGVNRTKILSNMIKQKRKEKSAKWQVP 120 Query 126 IPKVKAMTEEEMFKVLRSGKRKKKMWKRVVNKVCFVGDDFTRKPPKFERYIRPTSLRFKK 185 IPK+KA+ E+EMFK+LR+GKR+KK WKRVVNKVCFVG+DFTRKPPK ERYIRPT LRFKK Sbjct 121 IPKIKALNEDEMFKILRTGKRQKKSWKRVVNKVCFVGNDFTRKPPKLERYIRPTGLRFKK 180 Query 186 AHVTHPELKATFQLDIVKVKKNPQSQLYTSLGVITKGTIIEVNVSELGLVTQTGKVVWAK 245 AHVTHPELK TF LDIV +KKNPQSQLYT+LGVITKGTIIEVNVSELGLVTQTGKVVWAK Sbjct 181 AHVTHPELKTTFYLDIVSIKKNPQSQLYTTLGVITKGTIIEVNVSELGLVTQTGKVVWAK 240 Query 246 YAQVTNNPELDGCINAVLLV 265 YAQVTNNPE+DGCINAVLLV Sbjct 241 YAQVTNNPEIDGCINAVLLV 260 Lambda K H 0.317 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 83755957455 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40