bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0366_orf1 Length=152 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0845w 77.0 2e-13 > 5833.PFI0845w Length=339 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query 4 WLIVSFINTVWIFAAPNDWCSHRWNAQAIVAVDNCRLWYKGNVKCLSTEQNQQNAESGL- 62 W I++ N + I+A PN WC +R N + +NCRL ++G V +T+ ++ A + Sbjct 140 WFIINVFNIITIYATPNLWCRNRLNVEGSFVANNCRL-FEGRVAACTTDMVERKASDSIN 198 Query 63 -VTTCNDGDELLAQKSLSFTP---KEGSTDCSFQDLSVCRAYANLREGKAV--DWNEAPL 116 V CND L +F P + T C+F ++++C Y +L V + + Sbjct 199 YVRKCNDLKFLRNHYYFTFVPDLKNKNYTQCTFNNINICILYKSLIYNHDVIEKIRKMNI 258 Query 117 DRCLGDDVVSPDSFHDSLSESSDLYRYLLIYVQG 150 + CL + + F+D ++SDLY+Y +++ G Sbjct 259 EGCLRNPPKDIEDFYDQGMKTSDLYKYSQLFIIG 292 Lambda K H 0.319 0.132 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22586169780 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40