bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0416_orf2 Length=104 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0260 85.9 3e-16 > 5833.PF13_0260 Length=255 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 3/87 (3%) Query 21 IIVWVFTEVYRT---VWPLRVAMLAIGAMNNVYSVLDIMDDTIRRKEPDSDAYKCASMTH 77 I +WV E Y+ WPL + M IG +N +YS++DI +D I R PDSD+YK A +T Sbjct 149 ISIWVLCEYYKDKVYYWPLIIIMTFIGVLNEMYSIVDIFEDLITRSTPDSDSYKYAKLTK 208 Query 78 CSSRLCGSLWGILALGFIVVEIYLLLA 104 CSS+LCG LW ++ FI++ IYL+ A Sbjct 209 CSSKLCGVLWLLINFFFIILTIYLIGA 235 Lambda K H 0.333 0.143 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22759408663 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40