bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0487_orf1 Length=107 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL0865w 82.4 4e-15 > 5833.PFL0865w Length=483 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 0/92 (0%) Query 15 VILRVYDISRGLASRLAPMLLGRPLEGVWHSGIQLGDLEYFYGGGVVRMRPYEIESMYGM 74 V L++YD+SRG+ +P+L+G+ ++GVWH+ + + ++EYFYGGG++ + E E+ Y + Sbjct 7 VKLKIYDLSRGMVKTWSPLLIGKQIDGVWHTAVLVYNMEYFYGGGILCLEQQEFETFYNI 66 Query 75 SPNKIEELGVTHKTNQEIQTFLTSISPRFTAE 106 P I ++G T +L I FT + Sbjct 67 KPVDIIDMGTTELLQTHFHEYLNGIQKNFTVD 98 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22528463995 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40