bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0490_orf2 Length=195 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd4_3290 85.5 8e-16 > 5807.cgd4_3290 Length=515 Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 84/201 (41%), Gaps = 71/201 (35%) Query 8 LKFRDHFVPVPV----------------------------QDIIKPVPCDVEI------- 32 L+FRDHFVP+PV +DIIKPVP DVE Sbjct 204 LEFRDHFVPIPVRKRVVPKFKMTEEVYEVECVREVPYFVYEDIIKPVPVDVEFGKREREM 263 Query 33 -----------KADVHAMWMRVNADLAEKRKEELGEK------YPYVQHPEGTVFG-EPG 74 +AD HAMWMRVNADL E+R+ +GE PY + +G EP Sbjct 264 DVHLMNPAELSQADFHAMWMRVNADLLEERRVLVGEMEIDRMITPYREAMDGIDSNQEPS 323 Query 75 SKRTDESAEGAEVS----DP--------------ENEWIKKETTATHEMYTPEWFEAHQK 116 +R + DP +N+WI T T EMYT E+F Q+ Sbjct 324 LERMQSFERQMNLQRQLWDPLPMSPGNPLMMTYLQNQWILTPTIQTQEMYTQEFFMLQQQ 383 Query 117 AMHNLTMQYPTQVQLSAEQAA 137 A++NL P QV L+ Q + Sbjct 384 AVYNLVTGAPQQVNLAPHQIS 404 Lambda K H 0.312 0.127 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 45508314650 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40