bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0526_orf5 Length=509 Score E Sequences producing significant alignments: (Bits) Value 106370.Francci3_3077 62.4 4e-08 > 106370.Francci3_3077 Length=708 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%) Query 351 GFSHNDLKLQNLFVREDGTFFIGDFGAGTLVGQPLDRLTGVTIQYAEKELAVAAEEDTPG 410 G H D+K +N+ + +DG + DFG V QP LTG + L A E+ T G Sbjct 140 GIIHRDIKPENILLGDDGQVKVADFGLARPVSQPTQALTGGVVMGTVGYL--APEQVTHG 197 Query 411 DPRPVADERSDLWSLGLCLYSIFTDGKLPYGLDTTDSPGATLKELAERKVNSKTLRRDLM 470 VAD RSD+++ G+ L+ T G+LP+ GAT +A + V+ M Sbjct 198 ----VADTRSDVYAAGVVLFESLT-GQLPHS-------GATPMSVAYQSVHGDVPAPSTM 245 Query 471 KEGVPLRWQDLIIDLLKVERSER-MDACTLVA 501 EG+P L++ + + R +D L+A Sbjct 246 IEGIPAELDGLVLRATARDPARRPVDGAALLA 277 Lambda K H 0.317 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 220026895288 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40