bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_0562_orf1
Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  316058.RPB_2988                                                     67.0    1e-10


> 316058.RPB_2988
Length=134

 Score = 67.0 bits (162),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 21/110 (19%)

Query  3    RQPRPHDGSATEASATP-----SHASGPL----------GLSG------HRRKNWGEDEV  41
            R+PRP     TEA+AT      S A G +          G +G      + R     DEV
Sbjct  15   RRPRPQVMRLTEAAATRVKDLMSRADGEIVGLRVGIKNGGCAGQSYTVEYARDLQATDEV  74

Query  42   VVVEGVEIRVAADAVMLLIGTQVDFVDEDVQTGFIFNNPNQKHSCGCGKS  91
            +  +GV+I +   AV+ L+GT++D+  + +Q  F+FNNPNQ  +CGCG+S
Sbjct  75   IEDKGVKILIDPKAVLFLLGTEMDYKADKMQAQFVFNNPNQISACGCGES  124



Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 22695718710


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40