bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0800_orf1 Length=84 Score E Sequences producing significant alignments: (Bits) Value 243233.MCA1952 73.6 1e-12 > 243233.MCA1952 Length=937 Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats. Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 12/87 (13%) Query 1 GQIYYDLLSERERIQSENNDPDNPGNRVALARVEQLSPFPFDLAIRDIQRYPNLRSVVWA 60 G++YYDLL R R Q+ N VAL R+EQL PFP + + ++RYPNL+ ++W Sbjct 805 GKVYYDLLETRRRYQT---------NHVALVRIEQLYPFPRNDFLAMLKRYPNLQELIWC 855 Query 61 QEEPMNQGKERRIN---PIIMDKEVDI 84 QEEP NQG +I P I+D+ DI Sbjct 856 QEEPENQGAWHQIKHRFPGILDRPFDI 882 Lambda K H 0.317 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22587329789 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40