bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0825_orf2 Length=144 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd5_1770 65.5 4e-10 > 5807.cgd5_1770 Length=185 Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 6/112 (5%) Query 30 RLLYRVMALPIDEGDEQTQKVIC-EVEDT--FSPSKQNEKKSIRSLVDMKRRKLLNLPRG 86 R+ YR + LP ++ + +C E+ED S N++ + +M RR+L +P G Sbjct 5 RVYYRTVRLPPEDSEIGDPISLCLEIEDLPGIESSYINDQ-FVNRYFNMARRELF-IPPG 62 Query 87 VKDFTPFSLWRPPIIPHHEGDQYRSIAHGRMGFLIVFDVTDPASFNTATELL 138 KD PF +WRPP +P G +Y + GRMGF+ V D+ D S A ELL Sbjct 63 TKDIIPFKIWRPPKVPLAAGQKYLPLTQGRMGFIFVCDINDIDSIK-AIELL 113 Lambda K H 0.319 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22567178795 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40