bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0863_orf1 Length=146 Score E Sequences producing significant alignments: (Bits) Value 323850.Shew_1821 130 1e-29 > 323850.Shew_1821 Length=374 Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 92/145 (63%), Gaps = 5/145 (3%) Query 2 ATFEEVVHLLLLGDLPNHQQLASLKHKLFRARQLPPQLLAVLRQIPKEAHPMDVLRTACS 61 ATFEEV +LL G+LPN QL + K +L R LP L VL++IP +AHPMDV+RT CS Sbjct 45 ATFEEVAYLLFNGELPNAAQLDAYKSELMSMRDLPQTLKEVLQRIPADAHPMDVMRTGCS 104 Query 62 FMGTVHPECNPSQQQVDIAIRLIGGFGGALNYWHHLANSGKEISLVSDPEDSVAMNFLKL 121 F+G + PE + SQQ A RL+ F + YW+ ++ G EI V+D EDS+ +FLKL Sbjct 105 FLGNLEPETDFSQQN-KAANRLLAAFPAIMCYWYRFSHDGVEIDCVTD-EDSLGGHFLKL 162 Query 122 MNGDPAFKPHPVVAKTLDVSLILYA 146 +NG H + +DVSLILYA Sbjct 163 LNGKTPSDQH---RRVMDVSLILYA 184 Lambda K H 0.322 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22393349475 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40