bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_0877_orf3
Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  5833.PFD0720w                                                        277    2e-73


> 5833.PFD0720w
Length=344

 Score =  277 bits (708),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 151/317 (47%), Positives = 195/317 (61%), Gaps = 75/317 (23%)

Query  2    MLSFGAVADDVVRFDRAYDNGDIAEFVRLCNSTCEI------------------------  37
            +LSF   ++D++RFD+AYD  D+ EFV LC+STCE+                        
Sbjct  31   LLSF--TSNDILRFDKAYDENDVQEFVNLCSSTCEVAKKKKKKKKIHIYIYIYIYVYIYI  88

Query  38   --EKLEDRMHPWAADPETIGALAATQLAIFASREQ------------------------E  71
              EKLEDRMHPWAADP+TIGAL+ATQLAI AS+E                         E
Sbjct  89   YIEKLEDRMHPWAADPKTIGALSATQLAILASKESKMENRKNKKIIFFFLNTKIYIYIYE  148

Query  72   PHLKDEIREAGGIEVLVKLLASKELDRRQSAVVALSFLSVDNN-----------------  114
            PH KD IREA GI V + LL S ELDR  +AVVALSFLSVD+                  
Sbjct  149  PHYKDAIREANGIAVFINLLKSHELDRVHAAVVALSFLSVDSKKTKIHNKKKIYMHIFFE  208

Query  115  --QNCIAMYNEGALPPLIQGMKSDIEGMRAACAQTAHNIYVLGPKQRRAFLKAGGIAQLV  172
              +NCI M+  GALP LI GMKS+I+GM+AACAQT  NI+VL  K ++ FLK GGI QLV
Sbjct  209  DVKNCICMFESGALPYLISGMKSNIDGMKAACAQTCRNIFVLDKKYKKEFLKLGGITQLV  268

Query  173  RFLDAPPN---AKNLYTQLEAIYHLEDFIAEEGGDDVPEFVQAVKSAGAVQKLMKLRDHQ  229
              L+ P N   ++ LYTQLEAIYHLEDFI  + GD++PEF++AVK++ +++ L  L+   
Sbjct  269  NLLELPSNYDDSQPLYTQLEAIYHLEDFILND-GDEIPEFLEAVKNSNSIKNLKTLQQCP  327

Query  230  DKDVADAAGLLLVRLAD  246
            ++D+A+A+ +LL+RL D
Sbjct  328  EQDLAEASNVLLLRLTD  344



Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 73210338641


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40