bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_0887_orf1
Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  5833.PFE0560c                                                        106    8e-22


> 5833.PFE0560c
Length=1419

 Score =  106 bits (265),  Expect = 8e-22, Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 27/229 (11%)

Query  2     STDGMRYDG--SWVNDERHGHGVLDHEPMGYLYVGQWQHNKKSGEGHLYSRKERYWGNFV  59
             S  G  Y+G  S++ + + G G          + G+W +++ +G GHLY +  +Y+G F 
Sbjct  857   SLKGYVYEGTYSFLKNCKQGLGKFVSNIYDITFQGEWHNDQINGSGHLYHKNFKYFGKFK  916

Query  60    DNKYHGRGRYVQRDGLEYEGEFARGRFEGLGKLSLSRDEGINTSGDCRKGVVIRGSFEGG  119
             +N +   G +V     +YEGEF  G F G GKL  +++  I             G F+  
Sbjct  917   NNLFTENGIFVDNLLNQYEGEFLNGYFNGNGKLIYNKNTYI-------------GIFKNN  963

Query  120   KVTGVVNAVYADGKTYTGELSPETLLPEGGGSMLYRDSCLYDGQWRSGMRHGAGVLTIPV  179
              + G    +Y +G  YTGE+  +  LP G G + Y DS +++G +  G + G G LT+  
Sbjct  964   NLIGQGKILYKNGSVYTGEI--KNFLPHGYGFLSYDDSAIFEGYFIEGKKSGNGFLTLKC  1021

Query  180   GVVGRTSVSNGGSEHEAVIVDGQWQDDMPDPDAEWSVTFPTGDKYLGQL  228
                     S          ++G+W++D P     + + FP  DKY+G++
Sbjct  1022  NDPSNNIFS----------IEGKWENDEPVMRKSFHIVFPNKDKYIGKI  1060



Lambda     K      H
   0.316    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 101413109161


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40