bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0891_orf1 Length=185 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF0760w 79.0 7e-14 > 5833.PFF0760w Length=156 Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 23/143 (16%) Query 48 PGRTRGGGYGGPSP-----YGRSGPYSTGGGGGGMNHWSSNSSSSYGGGGGPNSSGVHWS 102 R R Y S Y + Y T +N Y G G S Sbjct 10 EHRRRKNNYNNKSHGKYYNYNKHDDYKTNNQHNRIN--------KYRGKG---------S 52 Query 103 WSNGPRGGSSTAIVRISGLDYSVLDSELRELMEKSCEGILKVWIDYDKTDRSRGTGGCVF 162 + + ++ V+IS LDY++ ++L EL C+ ++ WI+YD TDRS GT CVF Sbjct 53 YGSNYEERNNEIRVKISNLDYTISKNDLMELFSNVCK-VVNAWINYDHTDRSNGTAVCVF 111 Query 163 RTLADAQRAVETFDGRRIEGKPL 185 + DAQ+A++ +DG IEG + Sbjct 112 ENINDAQKAIDKYDGSEIEGLSI 134 Lambda K H 0.313 0.140 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 40134932565 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40