bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_0990_orf1 Length=325 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI1115c 222 1e-56 > 5833.PFI1115c Length=343 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 125/272 (45%), Positives = 176/272 (64%), Gaps = 17/272 (6%) Query 59 EEREPPVEL----QEIFRRLRKLKQPITLFAETPWKRYCRLCKLEVQVIDDEMTEGQKNV 114 E E +E+ ++I LR+LK+PI LF ET +RY RL +L++ +E+ ++N+ Sbjct 76 ENEETNIEITLSNKQIIMLLRQLKEPIRLFGETDLQRYNRLKELKMN--KNELKINEQNI 133 Query 115 FHAMQREGEEEEEFEE-ESKPVPSSEKGEAEKSDAAAATQNAKSKETTEQ----TKEAAV 169 F + R +E+ + E EKG ++K D + + KE E+ KE + Sbjct 134 FGDVLRGRLKEDSLDLIEDNIEDEIEKG-SDKKDKNNSNVSISEKENNEKGKKIDKEKII 192 Query 170 IGWARKMLSLWEEELKSRSEDEKATAEGMQATALHRQTKKDLKPLFKKLKHRDLEADILE 229 W ++ + W EE+++ + +K QAT L QT KDLKPL KKLK + LE+DIL+ Sbjct 193 HEWIKRTMKEWNEEIENIVDSKKKIK---QATYL--QTHKDLKPLEKKLKQKTLESDILD 247 Query 230 KLFDIVSLCEERKYRDAHGAFMLLAIGNAAWPMGVTMVGIHERAGRSKLNTSQVAHILND 289 K+++IVS C+E+ ++ AH A+MLLAIGNAAWPMGVTMVGIHERAGRSK+ S+VAHILND Sbjct 248 KIYNIVSCCQEKNFKAAHDAYMLLAIGNAAWPMGVTMVGIHERAGRSKIYASEVAHILND 307 Query 290 ETTRKYIQMFKRLMSFAQRKFPASPSQTILAS 321 ETTRKYIQM KRL+SF QRK+ +PS+ + S Sbjct 308 ETTRKYIQMIKRLLSFCQRKYCTNPSEAVNLS 339 Lambda K H 0.312 0.126 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 117726075721 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40