bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1037_orf3 Length=199 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0065 185 9e-46 > 5833.PF14_0065 Length=284 Score = 185 bits (469), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 94/149 (63%), Positives = 114/149 (76%), Gaps = 0/149 (0%) Query 1 LDLLSSVMQFIFFLYIAKFYKPKWYLQFKEGGPECLFFSYIRCLHAVCLALYGAATYLLE 60 LD +S+ +QFIF+LYI+KFY KWY+ F EGG E +FF ++R +HA LYG A YLLE Sbjct 124 LDTISATLQFIFYLYISKFYTRKWYVHFNEGGSEWVFFIFVRLVHAFSCLLYGLAAYLLE 183 Query 61 VYHDEGAGDLHAYINSALFGLASLVEFCVLFVPVGGASALTIWLALLAAAIWAVFFEPEV 120 VYHDEGAGDLHAYIN +F A L E V+F G S L +WLAL A ++W+ +FEPEV Sbjct 184 VYHDEGAGDLHAYINGVMFVFAGLTEIFVIFCNSGCYSNLLLWLALGAVSLWSYYFEPEV 243 Query 121 NNVSPALHETELTNDVEQQVEKFARLSPY 149 N+VSPALHETELTNDVEQQVEKF+R +PY Sbjct 244 NHVSPALHETELTNDVEQQVEKFSRYTPY 272 Lambda K H 0.322 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 47162034073 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40