bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1043_orf1 Length=86 Score E Sequences producing significant alignments: (Bits) Value 5085.AFUA_3G13790 60.8 1e-08 > 5085.AFUA_3G13790 Length=1303 Score = 60.8 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 9/79 (11%) Query 1 CVCLWLLDGYWGFPLSTLFLLIVVEAQTAFKHRRELLRVRQMQPVPPRVYVHRKHCNSTG 60 CV LW+LD YW + L TLF+L+V E+ ++ +R L R M P V+V+R+ Sbjct 214 CVGLWMLDEYWYYSLFTLFMLVVFESTVVWQRQRTLNEFRGMNIKPYDVWVYRQK----- 268 Query 61 GSTCSWQLIKAAGLLPGDV 79 WQ + + LLPGD+ Sbjct 269 ----KWQELTSDKLLPGDL 283 Lambda K H 0.330 0.143 0.513 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22443299781 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40