bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1098_orf3 Length=355 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0157 259 7e-68 > 5833.PF11_0157 Length=390 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 196/296 (66%), Gaps = 6/296 (2%) Query 1 YLPGFELPSNLRAVPSLTDACRDADLLVFVMPHQFIERACRELRKAKLLPPHCRAISLIK 60 Y+ G ++P N+ A+ +L + DADLL+FV+PHQ+++ E+ + L + RAISLIK Sbjct 97 YMKGMKIPENILAISNLKEVIDDADLLIFVLPHQYLDNVLDEIVQNNNLKKNARAISLIK 156 Query 61 GIGVRNGWPLTLTHEIGSILDLPKPCI-LSGANVANDVAAENFAEATIGHPDGETETAAL 119 GI + P L+ I LD+ C+ LSG+N+A +++ E+F+E+TIG E + Sbjct 157 GIKMVRSKPQLLSDIIEKKLDIE--CLALSGSNIAEELSREHFSESTIGFEKKGNE--VI 212 Query 120 WQLLFDRPNFKINVLPDVDGVEVCGALKNVVALAGGFCEGMGQGTNTKAAILRLGVEEIK 179 WQ LFDR FK+N + D GVE+CGALKNV+AL GF +G+ NTK+AI+R+G+EE+K Sbjct 213 WQNLFDRTYFKVNCIQDKPGVEICGALKNVIALGVGFIDGLTASYNTKSAIIRIGLEEMK 272 Query 180 TFTMLFFGDLLADTLYDSAGYADVITTVFGGRNARVAAAFVRQKGKD-WDQLEKEMLNGQ 238 F +FF ++L +T DS G AD+ITT GGRN + A F ++KG+D W+ +E E+LNGQ Sbjct 273 KFAKMFFPNVLDETFLDSCGLADLITTCLGGRNFKCAKEFAKRKGRDSWELIEAELLNGQ 332 Query 239 KLQGPATLELVAEVIRANEVEHLFPLFTSTYAVAFQNADPQAILDVFRTNRPRSIQ 294 KLQG T + V +V+ ++++ FPL + Y ++FQ +P +I+DV T + R+I+ Sbjct 333 KLQGIDTTKEVYDVLEYHQLKTEFPLICTIYEISFQKKNPCSIIDVLSTKKLRNIK 388 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 134495089842 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40