bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1368_orf2 Length=138 Score E Sequences producing significant alignments: (Bits) Value 5691.Tb927.8.7820 92.4 3e-18 > 5691.Tb927.8.7820 Length=504 Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 42/66 (63%), Positives = 53/66 (80%), Gaps = 0/66 (0%) Query 29 KAHVVRTPVSVGDIFVHQSYIQMQGFRALSVGDKVVFRIGVLPGKKAHQAVSVQRTQESG 88 +A ++RTPV+VGD+FVHQSYI+MQGFRALS GD+V FR+G LPGK A+QAVSVQ + Sbjct 269 QATLLRTPVTVGDVFVHQSYIRMQGFRALSTGDRVAFRVGKLPGKDANQAVSVQLLSTAK 328 Query 89 KSVAAT 94 + AT Sbjct 329 PATGAT 334 Lambda K H 0.312 0.126 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22344559178 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40