bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_1427_orf1
Length=140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  3702.AT3G06060.1                                                    90.5    1e-17


> 3702.AT3G06060.1
Length=326

 Score = 90.5 bits (223),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query  5    NIQKTVAMNISTPFLQVKHILPSMLKRKF---GAICFTNSLAAFVPIYGFSTYSATKSAL  61
            +++ T+ +N+   F  +K  LP+M  RK     +I   +S A  V +YG++ YSA+K  L
Sbjct  136  DVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQVGVYGYAAYSASKFGL  195

Query  62   RAFAEVINQEVAGMDVLVANAFLPSVNTPGYEREKQVRHRLTEILEETSKIKQPEEVAEK  121
            +  A+ + QEV   D+ V   F P  NTPG+E E++ R  +T I+  +S   + EEVA+K
Sbjct  196  QGLAQALQQEVISDDIHVTLIFPPDTNTPGFEEEQKSRPEVTAIIAASSGSMETEEVAKK  255

Query  122  LDDHLEAGHRIITVDFEGW  140
              D ++AG+  ++ +FEG+
Sbjct  256  AMDGIKAGNFTVSCNFEGF  274



Lambda     K      H
   0.319    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 22914837435


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40