bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1497_orf3 Length=111 Score E Sequences producing significant alignments: (Bits) Value 60481.Shewmr7_1875 130 1e-29 > 60481.Shewmr7_1875 Length=527 Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/110 (52%), Positives = 81/110 (73%), Gaps = 0/110 (0%) Query 2 CGAANSLEVEVFARIIQGLGGAFLIPLSHAIILDTYPPEQQGKAMALWGMASVLGSFFGP 61 CGAA +LE V R++QG+ GA L+PLS +++LD+YPPE+ G AMALWG+ ++G GP Sbjct 119 CGAAQNLEQIVLFRLLQGVFGASLVPLSQSVLLDSYPPERHGSAMALWGVGVMVGPILGP 178 Query 62 TVGGYVTEYMTWRYIFYFNVPFGLLALAGAAVFLPETQRDPTRKLDWFGF 111 ++GG++TEY WR++FY N+PFGLLA G A ++ ET D +RK D GF Sbjct 179 SLGGWLTEYYNWRWVFYINLPFGLLAWFGLAAYVKETPLDHSRKFDLLGF 228 Lambda K H 0.327 0.144 0.465 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23016794144 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40