bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1557_orf2 Length=135 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G31290.1 85.5 4e-16 > 3702.AT1G31290.1 Length=1194 Score = 85.5 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 1/124 (0%) Query 8 GKNMKVVLILVLKHHNVRVALTQANTAGRRPTYNVPSGTMVDNTIVNPMYKSFLLNSHFS 67 G N ++ +I+ K H R + GR NVPSGT+VD TI++P F L S Sbjct 1024 GYNPQITVIVAQKRHQTRFFPATTSKDGRAKG-NVPSGTVVDTTIIHPFEYDFYLCSQHG 1082 Query 68 PLGTAKPSQYIIVRDDLSLSTDQVGRLVFVSCFNSVRTRDVIATPTPLRYAYLAAQRARI 127 +GT+KP+ Y ++ D++ +++Q+ +L+F CF R +A P+ YA AA R R+ Sbjct 1083 AIGTSKPTHYYVLSDEIGFNSNQIQKLIFDLCFTFTRCTKPVALVPPVSYADKAASRGRV 1142 Query 128 LITA 131 A Sbjct 1143 YYEA 1146 Lambda K H 0.323 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22597853330 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40