bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_1648_orf1 Length=118 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0091 67.8 1e-10 > 5833.PF13_0091 Length=906 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query 1 LLEWKELSFKTTYIDVADRFHLEEWWTWMQESERDDFFQEWMFDNKQMFKDKIKQRRRED 60 LL W +L+ TTY++ A +F+ +EWW W+ E ERD+ FQ++M K FK+ +++R++ Sbjct 517 LLNWDKLNECTTYVEFASQFYKQEWWEWITEKERDEVFQDFMDGYKSKFKETRRKKRKQK 576 Query 61 VAMLEEILEQNPQEYPFQK----KWVDVKDQLLSHPKLQNMMKIDVLQVWEEWVRHGYDQ 116 + EIL+Q QEY KW DV+ ++ KID L WE++ ++ Sbjct 577 M----EILKQKFQEYATDNKNPLKWNDVQKYFRDDEDFHSLHKIDALAAWEDFYEKYHNV 632 Query 117 ER 118 E+ Sbjct 633 EK 634 Lambda K H 0.321 0.135 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22460540320 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40