bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_2254_orf1
Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  5833.PF11_0242                                                       187    6e-47


> 5833.PF11_0242
Length=2265

 Score =  187 bits (476),  Expect = 6e-47, Method: Composition-based stats.
 Identities = 86/123 (69%), Positives = 104/123 (84%), Gaps = 0/123 (0%)

Query  1     EMVILRLLNHPNVIRLKEMVDTKETLYIVMELVRGGELFDLIHANHHLPEVHVNRIVSQL  60
             E+ ILRLL HPNVI LKE+++TKETLYI MELV+GGEL+D + A   L E+H N+I++QL
Sbjct  1868  EISILRLLRHPNVIYLKEIINTKETLYISMELVKGGELYDFLLAETRLSEIHANKIITQL  1927

Query  61    LSTVYYLHKSGIIHRDLKPENILLSDKTENATIKLADFGLSTLCAPNEFLHQPCGTLAYV  120
             + TV YLH+ GIIHRD+KPENILL+DK+ +A IKL DFGLSTLCAPNE L +PCGTLAYV
Sbjct  1928  IKTVAYLHRCGIIHRDIKPENILLTDKSRDAQIKLTDFGLSTLCAPNELLKEPCGTLAYV  1987

Query  121   APE  123
             APE
Sbjct  1988  APE  1990



Lambda     K      H
   0.322    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 22834639773


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40