bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2307_orf1 Length=104 Score E Sequences producing significant alignments: (Bits) Value 7719.ENSCINP00000016413 139 2e-32 > 7719.ENSCINP00000016413 Length=360 Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 3/103 (2%) Query 2 MSATRPLVGVYTPEGERLPPSSSILLPAVLSSPLRPDLVRFVYNNIIKNKRQSYAVSPYA 61 M+ RPLV VY+ +G S SI LPAV +P+RPD+V FV+ NI KN RQ+YAV A Sbjct 1 MACARPLVSVYSEKG---VASGSITLPAVFKAPIRPDIVNFVHTNISKNHRQAYAVKSIA 57 Query 62 GYKSSAESWGTGRAVSRVPRVKGGGTHRSGQASFANMCRGGGM 104 G ++SAESWGTGRAV+R+PRV+GGGTHRSGQA+F NMCRGG M Sbjct 58 GEQTSAESWGTGRAVARIPRVRGGGTHRSGQAAFGNMCRGGRM 100 Lambda K H 0.315 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22759408663 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40