bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2409_orf2 Length=89 Score E Sequences producing significant alignments: (Bits) Value 381754.PSPA7_2921 106 2e-22 > 381754.PSPA7_2921 Length=491 Score = 106 bits (264), Expect = 2e-22, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 0/86 (0%) Query 4 GLKLRRDNKIRPFTVLSCDNMPNNGKILKKMVIQFATEIDVEMATWISKHVCFPSTMVDR 63 L+ RRD + FTV+SCDN+P+NG++ +K ++ FA +D +A WIS HV FP+ MVDR Sbjct 172 ALRRRRDTGVPAFTVMSCDNLPHNGEVARKALLAFAERLDPALARWISAHVSFPNAMVDR 231 Query 64 ITPITSKEHITLLEEDYGIKDKWPVV 89 ITP+TS H L E +G++D WPVV Sbjct 232 ITPMTSPAHRRQLAERHGVEDAWPVV 257 Lambda K H 0.323 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23068210110 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40