bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2511_orf1 Length=123 Score E Sequences producing significant alignments: (Bits) Value 290339.ESA_03515 84.3 1e-15 > 290339.ESA_03515 Length=810 Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query 6 PLRTARMRAALPLTMAL-----LSADAWADAFDAQTLHQRGIDPELAYLLLDARRYTSGR 60 P+R R+ A + L +A L A FD L RG+D L DA ++ GR Sbjct 2 PIRIKRVSALVSLCLAQAAFCPLMALGQEAQFDMDILKNRGLDTTLGNYFADAAKFLPGR 61 Query 61 HAVSLTVNGQRRGRLDVRFDSQGALCFDRPLLDAADLVIPAPL-----DDSTCHDFLGEY 115 VSLT+NG+ +G + RF +G LC DR L +A L +P+ L D+S C+D+ +Y Sbjct 62 RPVSLTINGKEKGTVTARFGDKGQLCVDRAFLQSAGLQVPSALRGDKTDESGCYDYQKDY 121 Query 116 PQTVV 120 P TV+ Sbjct 122 PSTVI 126 Lambda K H 0.324 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22834639773 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40