bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.24+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eggV2
           2,483,276 sequences; 915,453,621 total letters



Query=  Emax_2561_orf1
Length=155
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  6239.Y52B11A.3a                                                     88.2    7e-17


> 6239.Y52B11A.3a
Length=541

 Score = 88.2 bits (217),  Expect = 7e-17, Method: Composition-based stats.
 Identities = 52/123 (42%), Positives = 64/123 (52%), Gaps = 16/123 (13%)

Query  26   GASNTVVPMRTAGRMGVSNQNRFRELMAANKPREDTLRLITPE-------------ELKK  72
            G+SN +    T GR   S   R +  +A  K   D LRL T +             EL K
Sbjct  8    GSSNGLFAKPTIGR---SEYGRVKVALAPGKGFMDWLRLTTNKHLAKRVSGGVDHVELMK  64

Query  73   HCTRSDCWVALEGVVYDVSSYLRFHPGGSSLLLSVGGRDASKEFFQARPWVSYKYILDGC  132
            H T+ DCWV L G+VYDV+ YL FHPGG   LL   GRDA+  F Q   WV+Y+ +L  C
Sbjct  65   HNTKDDCWVHLFGIVYDVTKYLDFHPGGIPELLRGAGRDATPLFNQYHAWVNYESMLKAC  124

Query  133  RVG  135
             VG
Sbjct  125  VVG  127



Lambda     K      H
   0.317    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 23746592502


  Database: eggV2
    Posted date:  Dec 15, 2009  4:47 PM
  Number of letters in database: 915,453,621
  Number of sequences in database:  2,483,276



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40