bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2599_orf1 Length=161 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0540w 133 2e-30 > 5833.PFI0540w Length=1165 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 38/188 (20%) Query 1 AILNESDLAGNWAPMFKHAEKVYSYSRASQLIRQTFDYPVLGLKETIMFSFGVNALEECG 60 +ILNE++L+ NWAP A+K+ + SRAS +I Q ++YP++G KE++M+ G N+LEE G Sbjct 922 SILNETELSVNWAPFLTSAKKIKNLSRASAIITQLYEYPIIGKKESLMYCLGANSLEELG 981 Query 61 AVIIFCQSPPEGEKEFLG-------------------KYIPEK----------------- 84 +I+ C++PPE K+ L K IP K Sbjct 982 CIILCCKAPPEFNKDILFYENMCEKININKFGEIIKVKEIPIKFRKTYKEVTFFDYTLPE 1041 Query 85 --GKIPRIQSADLVFLLYPISEGRQTTLELFGSFQHGIRYVPLRLITYLVKKIVRGMFVS 142 K+ R ++A+L FLLYP++ G+ T LELF F++ +Y P++++T+ +KKIV+ M+ + Sbjct 1042 PVPKLDRQRAANLCFLLYPMNNGKSTVLELFLHFENEFKYTPIKMVTFFIKKIVKNMYEN 1101 Query 143 IAKQSQHF 150 I K +++ Sbjct 1102 IIKSCRNY 1109 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26764363279 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40