bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2612_orf2 Length=99 Score E Sequences producing significant alignments: (Bits) Value 6239.H06I04.4a.1 116 2e-25 > 6239.H06I04.4a.1 Length=163 Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 0/97 (0%) Query 2 EAGVEEESTVFQSLELLGAGKKRKRKTYTKPKKQKHKNKKVKLAVLKFYKVDENNNVTRL 61 + G++ E+T++ +LELLG KKRK+K YT PKK K K KKVKLAVLK+YK+DEN +TRL Sbjct 52 DCGIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRL 111 Query 62 RKECPSKTCGSGVFMAQHENRNYCGRCGITYILQSGN 98 RKEC +CG GVFMAQH NR+YCGRC T ++ + Sbjct 112 RKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTAT 148 Lambda K H 0.313 0.130 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23144316443 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40