bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2675_orf1 Length=142 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI1195c 85.1 5e-16 > 5833.PFI1195c Length=390 Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 8/142 (5%) Query 1 DQIHTDLEKAFAFAASKFRLSHDDIVIIAGAIGGRFDHSITAVSFLYKVHNASAETLPPK 60 +Q +TDL+K K + +D +++ GA G RFD + +S LYK + +T+ Sbjct 246 NQENTDLDKCIE--KIKPYIYENDKILVLGATGNRFDQTCANISSLYK----NVQTIN-N 298 Query 61 VILLGECNACLLLPEGDNEVLLSDGVFSEACGLLPMAGEVRNVTTEGLKWNVKGEPLRVG 120 + L+GE N LL +G++ + ++ F + C LLP+ G+ + V TEGLK+N+ E L Sbjct 299 IYLIGENNFIFLLKKGNHVIQINLNAFQKGCALLPIGGKCK-VKTEGLKYNLNYEYLSFD 357 Query 121 GLISSSNIRIKVRIKIATSDPL 142 LISSSN I+ IKI+ PL Sbjct 358 SLISSSNEIIQNEIKISNDTPL 379 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22741008115 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40