bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2811_orf1 Length=90 Score E Sequences producing significant alignments: (Bits) Value 316057.RPD_2741 168 4e-41 > 316057.RPD_2741 Length=1043 Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 84/89 (94%), Positives = 88/89 (98%), Gaps = 0/89 (0%) Query 1 VARVELGPDERRGIAELNGEGEVASGIVLQRFGMNALDVIENVKKRFKEIATSLPKSVEI 60 VARVELGPDERRGIAELNGEGEVASGIVLQRFG+NALDVIENVKKRFKEIA+SLPKSVEI Sbjct 259 VARVELGPDERRGIAELNGEGEVASGIVLQRFGVNALDVIENVKKRFKEIASSLPKSVEI 318 Query 61 VPVYDRSNLIYAAIETLKRTLLEESVVVA 89 VPVYDRSNLIYAA+ETLK TLLEES+VVA Sbjct 319 VPVYDRSNLIYAAVETLKTTLLEESLVVA 347 Lambda K H 0.316 0.136 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22993711830 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40