bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2873_orf1 Length=119 Score E Sequences producing significant alignments: (Bits) Value 5833.PF10_0103 223 1e-57 > 5833.PF10_0103 Length=222 Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/119 (86%), Positives = 111/119 (93%), Gaps = 0/119 (0%) Query 1 PQVVRVGSKKVAWINFKDICAIMHRPSEHVLQFVLAELGTEGSIAGDGQLVLKGKYGPKH 60 PQVVRVGSKKVAWINFKDIC IM+R EHV FVLAELGTEGSIAG+GQLVLKGKYGPKH Sbjct 94 PQVVRVGSKKVAWINFKDICTIMNRNEEHVFHFVLAELGTEGSIAGEGQLVLKGKYGPKH 153 Query 61 IEALLRKYITEYVTCQMCKSPNTSMTRDSRTRLWHQSCSACGANRSVTTIKSGFHAVGK 119 IEALLRKYITEYVTCQMCKSPNT+M +DSRTRL+HQ C+ACGA RSVTTIKSGFHA+G+ Sbjct 154 IEALLRKYITEYVTCQMCKSPNTTMEKDSRTRLFHQHCNACGAKRSVTTIKSGFHALGR 212 Lambda K H 0.321 0.133 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22381075488 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40