bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_2993_orf1 Length=109 Score E Sequences producing significant alignments: (Bits) Value 3702.AT5G60390.1 139 2e-32 > 3702.AT5G60390.1 Length=449 Score = 139 bits (350), Expect = 2e-32, Method: Composition-based stats. Identities = 65/93 (69%), Positives = 79/93 (84%), Gaps = 1/93 (1%) Query 17 KQQQHALLAFTLGVKQMIVGINKMDATTPDKYSENRFNEIQAEVSRYLKTVGYNPEKVPF 76 + ++HALLAFTLGVKQMI NKMDATTP KYS+ R++EI EVS YLK VGYNP+K+PF Sbjct 132 QTREHALLAFTLGVKQMICCCNKMDATTP-KYSKARYDEIIKEVSSYLKKVGYNPDKIPF 190 Query 77 VPISGFMGDNMVEKSSNMPWYKGKTLVEALDSV 109 VPISGF GDNM+E+S+N+ WYKG TL+EALD + Sbjct 191 VPISGFEGDNMIERSTNLDWYKGPTLLEALDQI 223 Lambda K H 0.318 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22374500883 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40