bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3000_orf1 Length=142 Score E Sequences producing significant alignments: (Bits) Value 5671.LinJ35.4520 92.4 3e-18 > 5671.LinJ35.4520 Length=206 Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 0/135 (0%) Query 4 LGIKARELKRQSDRCYRESLQERDKIRRALLRQNQEGARIFAQNYVRKKQEGLNSLHMSS 63 L A++ + + RC +E QE +K + A+ + N EGARI+AQN +RKK E LN L +S+ Sbjct 13 LKFTAKQFLKNASRCEKEQKQEMNKCKHAMEKNNMEGARIYAQNSIRKKNEALNHLRLSA 72 Query 64 KLEAVASRLDGAHRSHQLTTKIHSVASGLSGALRKLDSSSSLREIELFSKLFDDLDVRSD 123 +++AV +RLD A + +T + + G+ L+ +D + R ++ F + F+ +DV S Sbjct 73 RMDAVVARLDTAIKMKMVTKNMGQMVKGMDKVLQSMDPAKISRLMDTFEQQFETMDVTSA 132 Query 124 SVSSLLDVSTSSALP 138 + + ST+ P Sbjct 133 YMEGAIGQSTAVTTP 147 Lambda K H 0.313 0.127 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22741008115 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40