bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3150_orf1 Length=80 Score E Sequences producing significant alignments: (Bits) Value 9544.ENSMMUP00000007537 138 4e-32 > 9544.ENSMMUP00000007537 Length=122 Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 64/74 (86%), Positives = 71/74 (95%), Gaps = 0/74 (0%) Query 1 PVYMAAVLEYLCAEILELAGNAARDHKKTRIIPRHIQLAVRNDEELSKFLGGVTIASGGV 60 PVY+AAVLEYL AEILELAGNAARDHKKTRIIPRHIQLAVRNDEEL+KFL GVT+ASGGV Sbjct 28 PVYLAAVLEYLVAEILELAGNAARDHKKTRIIPRHIQLAVRNDEELNKFLAGVTLASGGV 87 Query 61 MPNVHSVLLPKKTK 74 +PN+H+ LLPKK+K Sbjct 88 LPNIHTTLLPKKSK 101 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22875389805 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40