bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3156_orf1 Length=120 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF0805c 62.4 4e-09 > 5833.PFF0805c Length=625 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 7/117 (5%) Query 6 SFLIESNISSVLRCCDIAVKKVPHLLLFLKQTVMGDEDGVFADRVLVAADPTGEIVCSVH 65 SFL + NI ++L+ + K+ +++ +K + + G F L+ DP+G++ SVH Sbjct 507 SFLYKYNIHNILKNKHFSNYKIERMIVLVKNIICRNH-GYF----LIVMDPSGQMPASVH 561 Query 66 SSVSQAF--HLCPGSTLILQEVTVYYASYKLPYVLITQRSLVKAFPPSFIDDLLRQQ 120 V + H+ GSTL+L+ VT++ PY+++T RSLV+ P D L +++ Sbjct 562 KEVEIEYKKHIDIGSTLLLKNVTIFDTIDNFPYLIVTLRSLVRVIKPEQTDALTKEK 618 Lambda K H 0.325 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23080484097 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40