bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3253_orf1 Length=121 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0038 166 2e-40 > 5833.PF14_0038 Length=115 Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 75/106 (70%), Positives = 85/106 (80%), Gaps = 0/106 (0%) Query 15 MSRPDPDVTVPAGDPKAGAKVFKAKCAQCHTVNKGGAAKQGPNLFGFLGRASGSADFPYS 74 MSRP+P V VP GD K GAK+FKAKCAQCHT+NKGGA KQGPNL GF GR SG +DFPYS Sbjct 1 MSRPEPQVQVPEGDYKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGDSDFPYS 60 Query 75 EANKNSGIVWSEKHLWEYLVNPKAYIPGTKMVFASFDNSHRRCSRI 120 +ANKNSGI+WS+KHL+EYL+NPK YIPGTKM+FA R I Sbjct 61 DANKNSGIIWSDKHLFEYLLNPKLYIPGTKMIFAGIKKEKERADLI 106 Lambda K H 0.321 0.136 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22998535989 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40