bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Emax_3373_orf1 Length=108 Score E Sequences producing significant alignments: (Bits) Value 382253.COXBU7E912_0376 90.5 1e-17 > 382253.COXBU7E912_0376 Length=1003 Score = 90.5 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 0/106 (0%) Query 2 RPVRDQAIGDMREGGKEGVMVTVLSQDVDDFDEEMLSFATVKKVFSKQNEKKAGRMREMF 61 + VRDQ I DMREG K V V +LSQ +DDFDE M+ FAT + E+ + E+F Sbjct 811 QAVRDQVIQDMREGRKWKVQVALLSQSLDDFDEIMVEFATSIFIMDAGPEQTVRKTAEIF 870 Query 62 GLSSTAEYAVRHMIRPPSAKGSTFVGAFSTREGESVHLLNSTMGGI 107 GLS TAE A++ + P G+TF+ F+T+ G + LL +T+G + Sbjct 871 GLSHTAEIALKTRVHGPREDGATFLAQFATKNGLNTQLLTATLGPV 916 Lambda K H 0.316 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22451482439 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40