bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_0098_orf1 Length=94 Score E Sequences producing significant alignments: (Bits) Value SPAC1D4.12 57.8 5e-09 At1g03190 53.9 8e-08 7291258 50.8 6e-07 Hs15834617 48.9 2e-06 CE28992 42.4 2e-04 > SPAC1D4.12 Length=772 Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 0/67 (0%) Query 28 LQLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVTVTPETFQALANPVLPSDVVEEATPGSI 87 L L+++ + Q S+ Q + Q+ + LQ + Q +ANPVLP DV++EA PG+I Sbjct 263 LSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFMANPVLPEDVLKEAVPGNI 322 Query 88 RRAEHFV 94 RRAEHF+ Sbjct 323 RRAEHFI 329 > At1g03190 Length=758 Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 40/94 (42%) Query 1 DSERLRAEYQQLLQGMQLQQQRRREQQLQLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVT 60 D+ RLRAEY +L++G+ L+ D S Q Sbjct 277 DAGRLRAEYNRLVEGLALRG-------------------DLSGGDQW------------- 304 Query 61 VTPETFQALANPVLPSDVVEEATPGSIRRAEHFV 94 LANP LP D+++EA PG+IRRAEHFV Sbjct 305 --------LANPALPHDILKEAVPGNIRRAEHFV 330 > 7291258 Length=745 Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 0/66 (0%) Query 29 QLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVTVTPETFQALANPVLPSDVVEEATPGSIR 88 L + Q ++ + ++ Q+ Q L+ +V +T LANPVLP+DV+ E PG+IR Sbjct 241 HLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR 300 Query 89 RAEHFV 94 A+HF+ Sbjct 301 NADHFL 306 > Hs15834617 Length=760 Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 7/67 (10%) Query 28 LQLQEQQQQQSQDSSQPQQQQQQQQSQQLQRVTVTPETFQALANPVLPSDVVEEATPGSI 87 L+++E +Q+ +D + ++ + L+ + ET LANPVLP +V++EA PGSI Sbjct 271 LRIKETDEQRLRD-------EYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSI 323 Query 88 RRAEHFV 94 R AEHF+ Sbjct 324 RTAEHFL 330 > CE28992 Length=751 Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 0/26 (0%) Query 69 LANPVLPSDVVEEATPGSIRRAEHFV 94 LANPVLP ++ EA PG+IR+A HF+ Sbjct 299 LANPVLPDQILHEAVPGNIRQANHFL 324 Lambda K H 0.309 0.120 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1164659894 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40