bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_0305_orf1 Length=122 Score E Sequences producing significant alignments: (Bits) Value Hs4885579 89.7 1e-18 At3g20800 89.0 2e-18 At5g12980 85.9 2e-17 CE01161 80.5 7e-16 7293619 74.7 4e-14 SPAC29B12.06c 71.2 4e-13 7297484 68.2 4e-12 > Hs4885579 Length=299 Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 42/70 (60%), Positives = 54/70 (77%), Gaps = 0/70 (0%) Query 53 QQQQDRICQLVLDLSIAEKREGALLELSKRRESFPDLAPLLWFSFGTMAALLQEIIAAYP 112 Q +++I Q + +LS E RE ALLELSK+RES PDLAP+LW SFGT+AALLQEI+ YP Sbjct 16 QVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYP 75 Query 113 FLSPPSLTTQ 122 ++PP+LT Sbjct 76 SINPPTLTAH 85 > At3g20800 Length=316 Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/60 (73%), Positives = 50/60 (83%), Gaps = 0/60 (0%) Query 61 QLVLDLSIAEKREGALLELSKRRESFPDLAPLLWFSFGTMAALLQEIIAAYPFLSPPSLT 120 QLVLDLS E RE ALLELSK+RE F DLAPLLW SFGT+AALLQEI++ Y L+PP+LT Sbjct 40 QLVLDLSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLT 99 > At5g12980 Length=311 Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 43/60 (71%), Positives = 48/60 (80%), Gaps = 0/60 (0%) Query 61 QLVLDLSIAEKREGALLELSKRRESFPDLAPLLWFSFGTMAALLQEIIAAYPFLSPPSLT 120 QL+LDLS E RE AL ELSK+RE F DLAPLLW S GT+ ALLQEIIA YP LSPP++T Sbjct 36 QLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMT 95 > CE01161 Length=453 Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 51/91 (56%), Gaps = 0/91 (0%) Query 30 QQQQQQQQQQQQQQQQQQQQQQQQQQQDRICQLVLDLSIAEKREGALLELSKRRESFPDL 89 + Q QQ D I Q ++DL KRE ALLELSK+R+S PDL Sbjct 1 MNDARASPATQAQQTAVPSSANLDINTDEIMQWIIDLRDPPKREAALLELSKKRDSVPDL 60 Query 90 APLLWFSFGTMAALLQEIIAAYPFLSPPSLT 120 LW SFGTM+ALLQE++A YP + P +LT Sbjct 61 PIWLWHSFGTMSALLQEVVAIYPAIMPANLT 91 > 7293619 Length=304 Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 51/68 (75%), Gaps = 2/68 (2%) Query 55 QQDRICQLVLDLSIAEKREGALLELSKRRESFPDLAPLLWFSFGTMAALLQEIIAAYPFL 114 +Q+++ Q + +L+ + RE ALLELSK+RE+ DLAP+LW SFGT ALLQEI+ YP + Sbjct 25 EQEKVYQWINELAHPDTRETALLELSKKRET--DLAPMLWNSFGTACALLQEIVNIYPSI 82 Query 115 SPPSLTTQ 122 +PP+LT Sbjct 83 TPPTLTAH 90 > SPAC29B12.06c Length=283 Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 40/52 (76%), Gaps = 0/52 (0%) Query 69 AEKREGALLELSKRRESFPDLAPLLWFSFGTMAALLQEIIAAYPFLSPPSLT 120 RE AL+ELS++RE + DLA +LW S+G M ALLQEII+ YP L+PP+LT Sbjct 24 GTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPTLT 75 > 7297484 Length=290 Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 2/69 (2%) Query 51 QQQQQQDRICQLVLDLSIAEKREGALLELSKRRESFPDLAPLLWFSFGTMAALLQEIIAA 110 QQQ +++++ QL+++L+ RE ALLELSK ++ DLAP+LW S GT LLQEI+ Sbjct 12 QQQAEREKVYQLIIELAYPATRETALLELSK--NTYADLAPMLWKSVGTTCTLLQEIVNI 69 Query 111 YPFLSPPSL 119 YP ++ P L Sbjct 70 YPIITTPVL 78 Lambda K H 0.312 0.121 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1194805952 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40