bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_0531_orf3
Length=186
Score E
Sequences producing significant alignments: (Bits) Value
SPAC222.06 47.8 1e-05
YAL025c 45.8 5e-05
CE04006 42.4 6e-04
Hs14210516 41.6 9e-04
7290981 37.0 0.025
At1g23280 36.2 0.038
7299007 30.0 2.8
> SPAC222.06
Length=302
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%), Gaps = 0/34 (0%)
Query 3 REAAREKKALVAAHIEDVIEDELLKRLHQGVYGD 36
REA+RE+KAL+AA +E IE EL+KRL GVYGD
Sbjct 143 REASRERKALIAAKLEKNIEKELVKRLKSGVYGD 176
> YAL025c
Length=306
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 0/36 (0%)
Query 1 ERREAAREKKALVAAHIEDVIEDELLKRLHQGVYGD 36
+RRE RE+KALVAA IE IE EL+ RL G YGD
Sbjct 142 KRREQNRERKALVAAKIEKAIEKELMDRLKSGAYGD 177
> CE04006
Length=323
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 0/29 (0%)
Query 11 ALVAAHIEDVIEDELLKRLHQGVYGDLYN 39
ALVAA ++ IE ELL RL QG YGD+YN
Sbjct 152 ALVAAKLDHAIEKELLARLKQGTYGDVYN 180
> Hs14210516
Length=300
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%), Gaps = 0/29 (0%)
Query 11 ALVAAHIEDVIEDELLKRLHQGVYGDLYN 39
AL+AA +++ IE ELL+RL Q YGD+YN
Sbjct 152 ALIAAQLDNAIEKELLERLKQDTYGDIYN 180
> 7290981
Length=343
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
Query 10 KALVAAHIEDVIEDELLKRLHQGVYGDLYN 39
KALVAA I++ IE L+ RL G Y D+YN
Sbjct 150 KALVAAKIDNHIEKALMDRLKNGTYRDIYN 179
> At1g23280
Length=303
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query 2 RREAAREKKALVAAHIEDVIEDELLKRLHQGVY-GDLYN 39
+RE+ RE+KA+ AA ++ IE EL++RL +G+Y ++YN
Sbjct 142 KRESRREEKAIKAAQLDKAIETELMERLKKGIYPTEIYN 180
> 7299007
Length=312
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query 72 AAADSDEEEYASSDFGS----DDDIEGSSSESDAFSFSGS-DSEAEESEDEIEEEEEKAA 126
A+ + EE+ + DF + DD +E + D FSG D + + ++ + E + A
Sbjct 178 ASVNLYTEEFQNFDFDNSALFDDSVE---DDEDLMLFSGGEDFDGNDGSFDLADGENQDA 234
Query 127 KAAWKGKKKEESTVDLEDLHPPSVLQKKRKAANEKERKDVPVSTLRRQAAKSKIYNGCL 185
A GKK+ + P V +K+R AAN +ER+ + L + + + Y CL
Sbjct 235 AAGGSGKKRRGKQIT------PVVKRKRRLAANARERRR--MQNLNQAFDRLRQYLPCL 285
Lambda K H
0.302 0.122 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3022542264
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40