bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_0734_orf1 Length=140 Score E Sequences producing significant alignments: (Bits) Value CE08070 82.0 3e-16 At5g50240 81.6 4e-16 Hs4885539 81.6 5e-16 7296733 69.3 2e-12 SPAC869.08 64.7 5e-11 At1g18310 30.4 1.1 YGR065c 28.5 4.2 Hs17449952 27.3 8.5 > CE08070 Length=225 Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 20/134 (14%) Query 4 GGIAIGIDYIQGLVDLSKKNVTAGFPHLMQSRNFALLKGDGWAGGPSWGAPYDAIHVGAA 63 G +GI+++ LV+LS+KN+ ++ N +++GDG G APY+AIHVGAA Sbjct 103 NGTVVGIEHMPQLVELSEKNIRKHHSEQLERGNVIIIEGDGRQGFAE-KAPYNAIHVGAA 161 Query 64 AAAVPAALLQQLAIGGKMVIPVECHEGLITLEGLGDRQIDGDCDGGQALVVISKNKEGAV 123 + VP AL QLA GG+M+IPVE DG Q + I K G + Sbjct 162 SKGVPKALTDQLAEGGRMMIPVE------------------QVDGNQVFMQIDK-INGKI 202 Query 124 SVKYITSVVYVPLV 137 K + V+YVPL Sbjct 203 EQKIVEHVIYVPLT 216 > At5g50240 Length=269 Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 22/136 (16%) Query 5 GIAIGIDYIQGLVDLSKKNVTAGFP-HLMQSRNFALLKGDGWAGGPSWGAPYDAIHVGAA 63 G +G+D+I LVD+S KN+ ++ + +L GDG G + APYDAIHVGAA Sbjct 148 GRVVGVDHIPELVDMSIKNIEKSVAASFLKKGSLSLHVGDGRKGWQEF-APYDAIHVGAA 206 Query 64 AAAVPAALLQQLAIGGKMVIPVECHEGLITLEGLGDRQIDGDCDGGQALVVISKNKEGAV 123 A+ +P LL QL GG+MVIP+ + Q L VI KN++G++ Sbjct 207 ASEIPQPLLDQLKPGGRMVIPLGTY--------------------FQELKVIDKNEDGSI 246 Query 124 SVKYITSVVYVPLVRQ 139 V TSV YVPL + Sbjct 247 KVHTETSVRYVPLTSR 262 > Hs4885539 Length=227 Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 70/133 (52%), Gaps = 19/133 (14%) Query 5 GIAIGIDYIQGLVDLSKKNVTAGFPHLMQSRNFALLKGDGWAGGPSWGAPYDAIHVGAAA 64 G IGID+I+ LVD S NV P L+ S L+ GDG G APYDAIHVGAAA Sbjct 104 GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAIHVGAAA 162 Query 65 AAVPAALLQQLAIGGKMVIPVECHEGLITLEGLGDRQIDGDCDGGQALVVISKNKEGAVS 124 VP AL+ QL GG++++PV G G Q L K ++G++ Sbjct 163 PVVPQALIDQLKPGGRLILPV------------------GPAGGNQMLEQYDKLQDGSIK 204 Query 125 VKYITSVVYVPLV 137 +K + V+YVPL Sbjct 205 MKPLMGVIYVPLT 217 > 7296733 Length=226 Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 19/130 (14%) Query 8 IGIDYIQGLVDLSKKNVTAGFPHLMQSRNFALLKGDGWAGGPSWGAPYDAIHVGAAAAAV 67 +GI++ LV SK N+ ++ S +++GDG G P APY+AIHVGAAA Sbjct 112 VGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYNAIHVGAAAPDT 170 Query 68 PAALLQQLAIGGKMVIPVECHEGLITLEGLGDRQIDGDCDGGQALVVISKNKEGAVSVKY 127 P L+ QLA GG++++PV G G Q + K+ G V + Sbjct 171 PTELINQLASGGRLIVPV------------------GPDGGSQYMQQYDKDANGKVEMTR 212 Query 128 ITSVVYVPLV 137 + V+YVPL Sbjct 213 LMGVMYVPLT 222 > SPAC869.08 Length=230 Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 27/140 (19%) Query 4 GGIAIGIDYIQGLVDLSKKNVTAGFPH------LMQSRNFALLKGDGWAGGPSWGAPYDA 57 G GI++I LV+ SKKN+ H + + + + GDG G S +DA Sbjct 103 NGTVKGIEHIPQLVETSKKNLLKDINHDEVLMEMYKEKRLQINVGDGRMGT-SEDEKFDA 161 Query 58 IHVGAAAAAVPAALLQQLAIGGKMVIPVECHEGLITLEGLGDRQIDGDCDGGQALVVISK 117 IHVGA+A+ +P L+ QL GK++IP+ + Q + +I K Sbjct 162 IHVGASASELPQKLVDQLKSPGKILIPIGTY--------------------SQNIYLIEK 201 Query 118 NKEGAVSVKYITSVVYVPLV 137 N++G +S + + V YVPL Sbjct 202 NEQGKISKRTLFPVRYVPLT 221 > At1g18310 Length=649 Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Query 23 NVTAGFPHLMQSRNFALLKGDGWAGGPS--WGAPYDAIHVGAAAAAVPAALLQQLAIGGK 80 N + +P L RNF L K WAGG + W A A AALL LA G K Sbjct 459 NSNSSYPRL---RNFDLFKLHSWAGGLTEFWDGRNQESTSEAVNAYYSAALL-GLAYGDK 514 Query 81 MVIPVECHEGLITLE 95 + VE ++TLE Sbjct 515 HL--VETASTIMTLE 527 > YGR065c Length=593 Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%) Query 23 NVTAGFPHLMQSRNFALLKGDGWAGGPSWGAPYDAIHVGAAAAAVPAALLQQLAIGGKMV 82 +VT+G L+QSR F L G G W DAI A ++P A++ I G Sbjct 266 SVTSG---LLQSRIFKSLNGVHGLAGWRWMFLIDAI-----AISLPTAIIGFFVIPG--- 314 Query 83 IPVECHEGLITLE 95 +P +C+ +T E Sbjct 315 VPSKCYSLFLTDE 327 > Hs17449952 Length=1205 Score = 27.3 bits (59), Expect = 8.5, Method: Composition-based stats. Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Query 42 GDGWAGGPSWGAPYD--AIHVGA 62 GDGWA GP APYD ++H G+ Sbjct 1062 GDGWAQGPP--APYDGPSVHAGS 1082 Lambda K H 0.318 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1571531578 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40