bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_0819_orf1
Length=111
Score E
Sequences producing significant alignments: (Bits) Value
YPL109c 31.2 0.50
At1g61640 29.6 1.4
CE24201 28.5 3.5
At1g11390 27.3 6.8
YBR112c 26.9 9.5
Hs4507831 26.9 9.9
> YPL109c
Length=543
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query 1 VEEFAVSMRRQLDFGLEEKHLKLFRSNFGLSTD-PIPSDILPLRNR 45
V++F++ M QLD +E +L+ F NF S P LPL NR
Sbjct 247 VDQFSILMNIQLDLRIEALNLERFNENFKNSIQVKFPKPFLPLSNR 292
> At1g61640
Length=428
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query 1 VEEFAVSMRRQLDFGLEEKHLKLFRSNF-GLSTDPIPSDILPL 42
V++F+V M Q+D E HL F NF G P I PL
Sbjct 161 VQQFSVYMLSQVDLSREASHLSRFIYNFRGWKDVSFPKPIYPL 203
> CE24201
Length=600
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 0/28 (0%)
Query 1 VEEFAVSMRRQLDFGLEEKHLKLFRSNF 28
+E+F + +RRQ+D E K LK F NF
Sbjct 282 LEQFEMVLRRQVDLRNEAKALKKFSDNF 309
> At1g11390
Length=456
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query 1 VEEFAVSMRRQLDFGLEEKHLKLFRSNFGLSTD-PIPSDILPL 42
V++F V M Q+D E HL F NF D P + PL
Sbjct 161 VQQFGVFMLSQVDLAREASHLSRFIYNFRRWKDVSFPKPVYPL 203
> YBR112c
Length=966
Score = 26.9 bits (58), Expect = 9.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
Query 30 LSTDPIPSDILPLRNRCRRHSEPEQSDFLTAGPKAE 65
LST +P++ P+ + R+HS+ E + P E
Sbjct 856 LSTATVPAEASPVEDEVRQHSKEENGTTEASAPSTE 891
> Hs4507831
Length=1050
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 0/30 (0%)
Query 46 CRRHSEPEQSDFLTAGPKAERHPTSIFGSL 75
CR HS P SD PK + PT G++
Sbjct 552 CRLHSAPNLSDLHVVRPKLPKPPTDPLGAV 581
Lambda K H
0.321 0.137 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1192473466
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40