bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Emax_1100_orf2 Length=78 Score E Sequences producing significant alignments: (Bits) Value Hs5031653 47.0 7e-06 CE01400 46.2 1e-05 7301643 41.2 5e-04 At3g18160_2 40.8 5e-04 Hs13637631 27.7 5.1 At2g22040 27.3 6.7 At3g54870 26.9 8.2 7304095 26.9 9.0 > Hs5031653 Length=225 Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query 3 MLGKEIARKAKGEPIPELDLSKYTSFSVPSGSKAGDVKAWEKTVINCQQLLQHAATAHIN 62 ++ E R A +PI L + +Y PS + D+ AW++ V N L+H A N Sbjct 65 IMRNEFERLAARQPIELLSMKRY-ELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIEN 123 Query 63 LELMNAHAAASWQ 75 LELM+ H +W+ Sbjct 124 LELMSQHGCNAWK 136 > CE01400 Length=254 Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query 6 KEIARKAKGEPIPELDLSKYTSFSVPSGSKAGDVKAWEKTVINCQQLLQHAATAHINLEL 65 KE+ R K E + +LD+S+ PS K D K W K + N + +H INLEL Sbjct 94 KEMDRMKKKEEMGKLDMSR-CELPAPSAVKGVDRKLWAKVLRNAKAQNEHLLMRQINLEL 152 Query 66 MNAHAAASW-QRH 77 M+ +AA S+ QR+ Sbjct 153 MDEYAAESYLQRN 165 > 7301643 Length=278 Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query 3 MLGKEIARKAKGEPIPELDLSKYTSFSVPSGSKAGDVKAWEKTVINCQQLLQHAATAHIN 62 ++ E R P+ L + +Y PSG K +V AW++ + N L+H +N Sbjct 59 LMANEFERIQNRLPMETLSMKRYELPPPPSG-KLSEVSAWQEAIENSMAQLEHQWVRSLN 117 Query 63 LELMNAHAAASWQRHL 78 LELM + +W+ +L Sbjct 118 LELMLDYGTEAWKSYL 133 > At3g18160_2 Length=222 Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 0/75 (0%) Query 3 MLGKEIARKAKGEPIPELDLSKYTSFSVPSGSKAGDVKAWEKTVINCQQLLQHAATAHIN 62 +LGKE R G+P +D +P +K D AW++ + Q+ LQ N Sbjct 53 VLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELEN 112 Query 63 LELMNAHAAASWQRH 77 LELM+ W+++ Sbjct 113 LELMSKLGPELWRQN 127 > Hs13637631 Length=293 Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Query 1 ETMLGKEIARKAKGEPIPELDLSKYTSFSVPSGSKAGDVKAWEKTVIN 48 + LG EIA + + L L+ T+FS +G K+G +K++++ IN Sbjct 89 DNTLGTEIA--IEDQICQGLKLTFDTTFSPNTGKKSGKIKSYKRECIN 134 > At2g22040 Length=312 Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 0/28 (0%) Query 24 KYTSFSVPSGSKAGDVKAWEKTVINCQQ 51 +YT + SGS+ G VK W+ V CQ+ Sbjct 93 QYTGHMMYSGSEDGSVKIWDLRVRECQR 120 > At3g54870 Length=1070 Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query 15 EPIPELDLSKYTSFSVPSGSKAGDVKAWEKTVINCQ------QLLQ------HAATAHIN 62 E I +L + + S+ +K G+V TV+N Q Q+LQ HAA +N Sbjct 260 ETIQDLLAPEKNNISINEDAKTGEVSVPGATVVNIQDLDHFLQVLQVGETNRHAANTKMN 319 Query 63 LELMNAHA 70 E +HA Sbjct 320 TESSRSHA 327 > 7304095 Length=1019 Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query 15 EPIPE----LDLSKYTSFSVPSGSKAGDVKAWEKTVINCQQLLQHAATAHINLEL 65 +P+P+ DL Y GD KAW ++NC++ A H N ++ Sbjct 343 KPVPDDKRGFDLISYNRPYHFQAEDEGDQKAWMAVLVNCKEKALTKAFQHANPQM 397 Lambda K H 0.313 0.125 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1171925608 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40